Locus 5887

Sequence ID 2R_DroMel_CAF1
Location 18,597,987 – 18,598,089
Length 102
Max. P 0.814832
window9453

overview

Window 3

Location 18,597,987 – 18,598,089
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.64
Mean single sequence MFE -38.02
Consensus MFE -18.72
Energy contribution -19.03
Covariance contribution 0.31
Combinations/Pair 1.48
Mean z-score -2.31
Structure conservation index 0.49
SVM decision value 0.66
SVM RNA-class probability 0.814832
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18597987 102 - 20766785
AGAACUAUACGAACUGCUACGGGGGAUUUGGAUCGAGUGGUGCCAGCGGCAGUGGCGUCUGCUCCUUCUUUGGGG---CCACCAACUAUUGUGUGGCCGCCAAUU
.........((((((.(....).)).))))((..(((..((((((.(....)))))).)..)))..)).((((((---((((((.....)).)))))).)))).. ( -37.60)
>DroVir_CAF1 11915 102 - 1
AGAACUAUACAAAUUGCUAUGGUGGAUUUGGUCCAAAUCCAAGCAGUAGCAAUGGCGUUUGCUCCUUCUUUGGAG---CGCCCAACUAUUGUGUGGCUGCCAACU
............((((((((..((((((((...))))))))....))))))))(((....(((((......))))---)(((..((....))..))).))).... ( -37.50)
>DroPse_CAF1 13367 102 - 1
AGAACUACACGAACUGCUAUGCGGGAUUCGGGACGAAUCCCUCCAACGGCAACGGCAUGUGCUCCUUCUUUGGGG---CCACCAACUAUUGUGUGGCAGCCAACU
..........(((..(((((((((((((((...)))))))).....((....))))))).))...))).((((.(---((((((.....)).)))))..)))).. ( -37.00)
>DroMoj_CAF1 13521 96 - 1
AGAACUAUUCCAAUUGCUAUGGAGGAUUCGGCGCGAACCCAAGCAGUGCCAAUGGCGUCUGCUCCUUCUUCGGGG---CGCCCAACUACUGUGUG------AACU
.(((...(((((.......)))))..)))(((((.......(((((((((...)))).)))))(((.....))))---)))).............------.... ( -28.10)
>DroAna_CAF1 13019 105 - 1
AGAACUACGGCAACUGCUACGGCGGAUUCGGCGCGAGUCCGUCCACGGGCAACGGCGUCUGCUCGUUCUUCGGGGCUGCCACAAACUAUUGUGUGGCAGCCAACU
.(((..((((((.((((....))))....(((((..(((((....)))))....)))))))).)))..)))..((((((((((........)))))))))).... ( -50.90)
>DroPer_CAF1 13418 102 - 1
AGAACUACACGAACUGCUAUGCGGGAUUCGGAACGAAUCCCUCCAACGGCAACGGCAUGUGCUCCUUCUUUGGGG---CCACCAACUAUUGUGUGGCAGCCAACU
..........(((..(((((((((((((((...)))))))).....((....))))))).))...))).((((.(---((((((.....)).)))))..)))).. ( -37.00)
>consensus
AGAACUACACGAACUGCUAUGGGGGAUUCGGAACGAAUCCAUCCAGCGGCAACGGCGUCUGCUCCUUCUUUGGGG___CCACCAACUAUUGUGUGGCAGCCAACU
....((((((((..((((.(..((((((((...))))))))....).))))..((......((((......))))......)).....))))))))......... (-18.72 = -19.03 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:20 2006