| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,592,063 – 18,592,161 |
| Length | 98 |
| Max. P | 0.956050 |
| Location | 18,592,063 – 18,592,161 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.73 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18592063 98 - 20766785 AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUCAAAUUGCCGAUGCCCGGUGCGUCAGUCCCUCC--UCCCCCCAAUCGCGAUUCCCCC----- .....(((((((((((((.(((..((((......)))).))).)))))))).(((((.....))))).........--...........)))))......----- ( -22.70) >DroSec_CAF1 1681 96 - 1 AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUCAAAUUGCCGAUGCCCGGUGCGUCAGCCACCUA--CUCCCCC--UCCCGAAUCCCCC----- ....(((((.((((((((.(((..((((......)))).))).)))))))))))))...(((((....).))))..--.......--.............----- ( -22.50) >DroSim_CAF1 2122 96 - 1 AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUCAAAUUGCCGAUGCCCGGUGCGUCAGCCCCUCC--UCCCCCC--UCCCGAAUCCCCC----- ....(((((.((((((((.(((..((((......)))).))).)))))))))))))...((.((....)).))...--.......--.............----- ( -21.50) >DroEre_CAF1 2155 78 - 1 AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUCAAAUUGCCGAUGCCCGUUGCUGCCGCC----------------------AUUCCCC----- ....(((((.((((((((.(((..((((......)))).))).)))))))))))))...............----------------------.......----- ( -17.20) >DroYak_CAF1 1881 75 - 1 AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUGAAAUUGUCGAUGCCCGGUGC---GGCA----------------------AUUCCCC----- .........((((((((.((.((.((((......)))).)).)))))))).)).((((......---))))----------------------.......----- ( -15.40) >DroAna_CAF1 5190 103 - 1 AAAUCAUUGCGUAAUUUGCAUUUUAAGCAAAUCUGCUUCAAUUGAAAUCGUCGAUGCCCGCUGCAGUUUUCCGCCCCCGCCCCAC--UCCCGACCGCCUCGCCCA ...((((((.(((((((((.......)))))).)))..))).)))....((((.(((.....))).......((....)).....--...))))........... ( -13.80) >consensus AAAUCAUUGCGUAAUUUGCAUUUUGAGCAAAUCAGCUCCAAUUCAAAUUGCCGAUGCCCGGUGCGUCAGCCCC_CC___CCCCCC__UCCCGAAUCCCCC_____ ....(((((.((((((((.(((..((((......)))).))).)))))))))))))................................................. (-13.80 = -13.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:16 2006