| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,591,322 – 18,591,415 |
| Length | 93 |
| Max. P | 0.622242 |
| Location | 18,591,322 – 18,591,415 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -15.29 |
| Consensus MFE | -9.40 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18591322 93 - 20766785 AUUCGGCGUUUGGUAGCAACGAAU-UUAUUGC-AAAAAUUAUGCUUUGAUUUAUUUUAUUUCGUU-UUAUUUAUGCCUCCCUUAACUCUAAACUCA ....(((((..(((((.((((((.-(((..((-(.......)))..)))..........))))))-))))).)))))................... ( -14.90) >DroVir_CAF1 4024 82 - 1 AUGCAGCGCUUUGUAAAAAUGAAU-UUGUUGC-GGAAAUUAUGUUGUGAUUUAUUUUAUUUCAUU-UUAUUUAUGCCACAC------CGUU----- ..((((((.((..(....)..)).-.))))))-((.....(((..((((...........)))).-.))).....))....------....----- ( -11.90) >DroGri_CAF1 4702 84 - 1 AUGCGGCAUUUUGUGAAAGCGAGUUUUGCUGCUGGAAAUUAUGGUAUGAUUUAUUUUAUUUGAUU-UUAUUUAUGCAACCG------CUUC----- ..((((((.(((((....)))))...))))))..(((((((....((((......)))).)))))-))......((....)------)...----- ( -17.30) >DroSim_CAF1 1407 93 - 1 AUUCGGCGUUUGGUAGCAACGAAU-UUAUUGC-GAAAAUUAUGCUUUGAUUUAUUUUAUUUCGUU-UUAUUUAUGCCUCCCUUAACUCUAAACUCA ....(((((..(((((.((((((.-.......-..((((((.....)))))).......))))))-))))).)))))................... ( -13.83) >DroEre_CAF1 1440 92 - 1 AUUCGGCGUUUGCUAAAAACGAAU-UUAUUUC-AAAAAUUAUGCUUUGAUUUAUUUUAUUUCGUU--UAUUUAUGCCUCCCUUAACUCUAAACUCA ....(((((.......(((((((.-.((..((-(((........)))))..))......))))))--)....)))))................... ( -13.50) >DroYak_CAF1 1136 94 - 1 AUUCGGCGUUUGGUAAAAACGAAU-UUAUUUC-GAAAAUUAUGCUUUGAUUUAUUUUAUUUCGUUUUUAUUUAUGCCUCCCUUAACUCUAAACUCA ....(((((..((((((((((((.-.((..((-(((........)))))..))......)))))))))))).)))))................... ( -20.30) >consensus AUUCGGCGUUUGGUAAAAACGAAU_UUAUUGC_GAAAAUUAUGCUUUGAUUUAUUUUAUUUCGUU_UUAUUUAUGCCUCCCUUAACUCUAAACUCA ....(((((...((((.((((((...((.......((((((.....))))))....)).)))))).))))..)))))................... ( -9.40 = -9.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:15 2006