Locus 5880

Sequence ID 2R_DroMel_CAF1
Location 18,581,239 – 18,581,333
Length 94
Max. P 0.697095
window9440

overview

Window 0

Location 18,581,239 – 18,581,333
Length 94
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 86.62
Mean single sequence MFE -12.47
Consensus MFE -11.13
Energy contribution -10.69
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.89
SVM decision value 0.34
SVM RNA-class probability 0.697095
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18581239 94 - 20766785
AACUCUGUAUUUCACUCAACUUACUUACUUCUUGCUUUCUGCUAUAAUUUUUAAGAAAGAGCAAUGGAUUUAAAUCUGUUCU-------UCUUUGCAGACC
...(((((...........((((..........((.....)).........))))((((((.(((((((....))))))).)-------)))))))))).. ( -15.11)
>DroSec_CAF1 6039 97 - 1
UACUCUGUAUUUCACUCAACUU----ACUUUUUACUUUCUGCUUUAAUUUAUGAGAAAGAGCAAUGAAUUUAAAUCUAUUCUUCCGAUUUCUUUGCAGACC
...((((((......((.....----........((((((.(..........)))))))......((((........))))....))......)))))).. ( -11.50)
>DroSim_CAF1 3137 97 - 1
UACUCUGUAUUUCACUCAACUU----ACUUCUUACUUUCUGCUUUAAUUUAUGAGAAAGAGCAAUGAAUUUAAAUCUAUUCUUCCCACUUCUUUGCAGACC
...((((((.............----........((((((.(..........)))))))......((((........))))............)))))).. ( -10.80)
>consensus
UACUCUGUAUUUCACUCAACUU____ACUUCUUACUUUCUGCUUUAAUUUAUGAGAAAGAGCAAUGAAUUUAAAUCUAUUCUUCC_A_UUCUUUGCAGACC
...((((((.........................((((((.............))))))......((((........))))............)))))).. (-11.13 = -10.69 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:08 2006