Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,001,727 – 3,001,831 |
Length | 104 |
Max. P | 0.507985 |
Location | 3,001,727 – 3,001,831 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -12.10 |
Energy contribution | -12.58 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.15 |
Mean z-score | -1.69 |
Structure conservation index | 0.55 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3001727 104 - 20766785 UAGCA-----GAAUCAGUGUGACCAGCCAUUGUGAGGAUCAAAAACUAAACCUCCAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC ..(((-----...((.....))..((((((((.((((.............))))))))..)))).))).((((...(((((......))))).))))............ ( -28.72) >DroSec_CAF1 6032 108 - 1 UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAAUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC ...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80) >DroSim_CAF1 5925 108 - 1 UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAGUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC ...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80) >DroEre_CAF1 5901 87 - 1 -AACAUAUAUA-------------------UGCGACUAUCGAAAACUAAACCUCGAAUUCGGCUAUGCCC--AAUACCCUUAACGAACAGGGGCGCGAAUAACAAAAAC -......(((.-------------------((((....((((..........))))(((.(((...))).--))).((((........)))).)))).)))........ ( -14.00) >DroYak_CAF1 5810 98 - 1 -AACAUACACAUAAUUGUGUGA--------UGUGAUCAUUAAAAACUAAACAUUCAAUUCGGCUAUGCCC--AAUACCCUAAACGAACAGGGGCGCAAAUAACAAAAAC -....((((((....)))))).--------((((......................(((.(((...))).--))).((((........)))).))))............ ( -16.60) >consensus UAACAUAUAAAAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACUAAACCU_CAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC .............................(((((..........................(((...))).......(((((......))))).)))))........... (-12.10 = -12.58 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006