Locus 588

Sequence ID 2R_DroMel_CAF1
Location 3,001,727 – 3,001,831
Length 104
Max. P 0.507985
window1066

overview

Window 6

Location 3,001,727 – 3,001,831
Length 104
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 76.72
Mean single sequence MFE -22.18
Consensus MFE -12.10
Energy contribution -12.58
Covariance contribution 0.48
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.55
SVM decision value -0.05
SVM RNA-class probability 0.507985
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3001727 104 - 20766785
UAGCA-----GAAUCAGUGUGACCAGCCAUUGUGAGGAUCAAAAACUAAACCUCCAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC
..(((-----...((.....))..((((((((.((((.............))))))))..)))).))).((((...(((((......))))).))))............ ( -28.72)
>DroSec_CAF1 6032 108 - 1
UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAAUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC
...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80)
>DroSim_CAF1 5925 108 - 1
UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAGUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC
...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80)
>DroEre_CAF1 5901 87 - 1
-AACAUAUAUA-------------------UGCGACUAUCGAAAACUAAACCUCGAAUUCGGCUAUGCCC--AAUACCCUUAACGAACAGGGGCGCGAAUAACAAAAAC
-......(((.-------------------((((....((((..........))))(((.(((...))).--))).((((........)))).)))).)))........ ( -14.00)
>DroYak_CAF1 5810 98 - 1
-AACAUACACAUAAUUGUGUGA--------UGUGAUCAUUAAAAACUAAACAUUCAAUUCGGCUAUGCCC--AAUACCCUAAACGAACAGGGGCGCAAAUAACAAAAAC
-....((((((....)))))).--------((((......................(((.(((...))).--))).((((........)))).))))............ ( -16.60)
>consensus
UAACAUAUAAAAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACUAAACCU_CAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC
.............................(((((..........................(((...))).......(((((......))))).)))))........... (-12.10 = -12.58 +   0.48) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006