Locus 5879

Sequence ID 2R_DroMel_CAF1
Location 18,580,171 – 18,580,276
Length 105
Max. P 0.786090
window9439

overview

Window 9

Location 18,580,171 – 18,580,276
Length 105
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 84.66
Mean single sequence MFE -32.02
Consensus MFE -28.77
Energy contribution -28.93
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.90
SVM decision value 0.57
SVM RNA-class probability 0.786090
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18580171 105 - 20766785
----UAAAAAAA-GUUCUGCGCUGCGGACAGGAUUCGAACCUGCGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAACUGUG-UCGC--C
----........-(((((((.(((((..((((.......))))))))))))))))...((((((.....))))))...............(((((.......)))-))..--. ( -31.50)
>DroVir_CAF1 4187 107 - 1
----UAAAAAGAUCACUCUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCACAUAGCCA--A
----................((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...))))))).........--. ( -31.30)
>DroGri_CAF1 1594 107 - 1
----UAAAAAAUCGAAUUUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCACGUGUUGG--G
----.......((((.....((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...))))))).....))))--. ( -32.00)
>DroSec_CAF1 4873 105 - 1
----UAAAAAGA-UACCUGCGCUGCGGACAGGAUUCGAACCUGCGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCUGUU-CUGC--C
----........-.......(((((((...((.(((..((((....)))).))).)).((((((.....))))))........((....))...)))))))....-....--. ( -29.60)
>DroAna_CAF1 4578 104 - 1
----UAAAAAAA-GACUCUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCGCUCGGACACCGCAGCUGAU-UA-C--C
----........-.......((((((((((((.......)))))(((((.....))).((((((.....))))))..........)).......)))))))....-..-.--. ( -32.80)
>DroPer_CAF1 4251 110 - 1
GAACGUCAGGGA--ACUGCCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCUGAU-AUGUAAU
....(.(((...--.))).)((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...)))))))....-....... ( -34.90)
>consensus
____UAAAAAAA_GACUUUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCUGAU_UUGC__C
....................(((((((...((.(((..((((....)))).))).)).((((((.....))))))........((....))...)))))))............ (-28.77 = -28.93 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:07 2006