| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,579,596 – 18,579,709 |
| Length | 113 |
| Max. P | 0.975585 |
| Location | 18,579,596 – 18,579,709 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -31.07 |
| Energy contribution | -31.07 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18579596 113 + 20766785 AAACGU--GUUACAACUA----CACUAUCGCUGCGGACAGGACUUGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCCUU-AUUGAA ....((--((.......)----)))....(((((((...(((((((((.((((..(((.....))).))))..)))))))))..........((....))...)))))))...-...... ( -38.40) >DroVir_CAF1 3934 108 + 1 AAAUUU-----------CGU-AUAGCCCCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCUUCGAAUCGA ....((-----------(((-..(((...))))))))...((((((((.(((((.(((.....))).((((((.....))))))........((....))....))))).)))))))).. ( -31.70) >DroPse_CAF1 5639 101 + 1 AGAAUU--CUUAUAU-----------CCCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCACA-U----- ......--.......-----------...((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...)))))))...-.----- ( -31.30) >DroGri_CAF1 1333 120 + 1 ACAAAAUUAAUACAAAAAAAAAACUAUUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCAACGAGACGA .............................((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...))))))).......... ( -31.30) >DroAna_CAF1 3905 116 + 1 AAAAGU--UGUGCAAAAAAA-UCCCUUUCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCGCUCGGACACCGCAGCUUG-AGAGAA ......--............-...(((((((((((((((((.......)))))(((((.....))).((((((.....))))))..........)).......)))))))..)-)))).. ( -36.30) >DroPer_CAF1 3789 101 + 1 AGAAUU--CUUAUAU-----------CCCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCACA-U----- ......--.......-----------...((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...)))))))...-.----- ( -31.30) >consensus AAAAUU__CUUACAA__A________CCCGCUGCGGACAGGAUUCGAACCUGUGCGGGUAGAACCCAAUGGAUUUCAAGUCCAUCUCCUUAACCACUCGGACACCGCAGCAUA_A____A .............................((((((((((((.......)))))..(((.....))).((((((.....))))))........((....))...))))))).......... (-31.07 = -31.07 + -0.00)
| Location | 18,579,596 – 18,579,709 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -35.28 |
| Consensus MFE | -32.22 |
| Energy contribution | -32.08 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18579596 113 - 20766785 UUCAAU-AAGGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCAAGUCCUGUCCGCAGCGAUAGUG----UAGUUGUAAC--ACGUUU ......-...((((((((.(((..........))).).(((((((((......((((.....))))......)))))))))...)))))))....(((----(.......))--)).... ( -38.40) >DroVir_CAF1 3934 108 - 1 UCGAUUCGAAGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGGGGCUAU-ACG-----------AAAUUU ((((((((((.((((((.((((.((((((((((........)))))...))))).))....))))))..)).))))))))..((((......))))...-..)-----------)..... ( -35.00) >DroPse_CAF1 5639 101 - 1 -----A-UGUGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGGG-----------AUAUAAG--AAUUCU -----.-...(((((((.......((((.((..(.((((((.......))))))...)..)).))))(((((.......))))))))))))(((-----------((.....--.))))) ( -32.60) >DroGri_CAF1 1333 120 - 1 UCGUCUCGUUGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGAAUAGUUUUUUUUUUGUAUUAAUUUUGU .....(((((((.((((.((((.((((((((((........)))))...))))).))....))))))(((((.......)))))..)))))))........................... ( -34.40) >DroAna_CAF1 3905 116 - 1 UUCUCU-CAAGCUGCGGUGUCCGAGCGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGAAAGGGA-UUUUUUUGCACA--ACUUUU .(((((-...(((((((.......((((.((..(.((((((.......))))))...)..)).))))(((((.......))))))))))))...)))))-............--...... ( -38.70) >DroPer_CAF1 3789 101 - 1 -----A-UGUGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGGG-----------AUAUAAG--AAUUCU -----.-...(((((((.......((((.((..(.((((((.......))))))...)..)).))))(((((.......))))))))))))(((-----------((.....--.))))) ( -32.60) >consensus U____U_GAUGCUGCGGUGUCCGAGUGGUUAAGGAGAUGGACUUGAAAUCCAUUGGGUUCUACCCGCACAGGUUCGAAUCCUGUCCGCAGCGAG________U__UUGUAAG__AAUUUU ..........(((((((.......((((.((..(.((((((.......))))))...)..)).))))(((((.......))))))))))))............................. (-32.22 = -32.08 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:06 2006