| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,574,429 – 18,574,549 |
| Length | 120 |
| Max. P | 0.605324 |
| Location | 18,574,429 – 18,574,549 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.00 |
| Mean single sequence MFE | -49.28 |
| Consensus MFE | -36.08 |
| Energy contribution | -38.44 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18574429 120 + 20766785 UGUGCAGGUUGACCAGACGGUCGCAGAUUGCGGCUGCAGCAUCGCCGCUUCCUACUGCGGCCUGCGCGAUCGCCUCUAUCCGGAUCGCAAGUCCAUGGGCUUCCCCUUCGAUCGCAAGCC ...(((((((((((....))))((((...(((((.........)))))......)))))))))))(((((((.........(((.(....))))..(((....)))..)))))))..... ( -51.50) >DroSec_CAF1 54143 120 + 1 CCUGCAGGUUGAGCAGACGGCCGCAGAUUGCGGCUGCAGCAUCGCCGCUUCCUACUGCGGCCUGCGCGACAGCCUCUAUCCGGAUCGCAGGUCCAUGGGCUUCCCCUUCGAUCGCAAGCC ..(((((((((.((.(.(((((((.....)))))))).(((..(((((........))))).)))))..)))))).......(((((.(((.....((....))))).)))))))).... ( -49.90) >DroSim_CAF1 50085 120 + 1 CCUGCAGGUUGAGCAGACGGCCGCAGAUUGCGGCUGCAGCAUCGCCGCUUCCUACUGCGGCCUGCGCGACCGCCUCUAUCCGGAUCGCAAGUCCAUGGGCUUCCCCUUCGAUCGCAAGCC ..(((.((((((((((.(((((((.....))))))).......(((((........)))))))))(((((((........))).))))(((((....))))).....))))))))).... ( -51.00) >DroEre_CAF1 56250 120 + 1 CCUACAGGUCGACCAGAAGCCAGAGGAUUGUGAGUGCAGCAUUGCCGCUUCCUACUGCGGACUGCGCGAUCGCCUCUAUCCGGAUCGCAAGUCCAUGGGCUUCCCCUUCGAUCGCCAGCC ......((((((...(((((((((((.......((((((.....((((........)))).)))))).....)))))....(((.(....))))...))))))....))))))....... ( -46.50) >DroYak_CAF1 55978 120 + 1 CCUGCAGGUGGAACAGAAGGCAGCGGAUUGUGCCUGCAGCAUUGCCGCUUCCUACUGCGGACUGCGCGAUCGCCUCUAUCCGGACCGCAAGUCCAUGGGCUAUCCCUUCGAUCGCAGCAU .(((((((.....)...(((.(((((...((((.....))))..))))).))).))))))..((((((((((.........(((.(....))))..(((....)))..))))))).))). ( -47.50) >consensus CCUGCAGGUUGACCAGACGGCCGCAGAUUGCGGCUGCAGCAUCGCCGCUUCCUACUGCGGCCUGCGCGAUCGCCUCUAUCCGGAUCGCAAGUCCAUGGGCUUCCCCUUCGAUCGCAAGCC ...((((((((......(((((((.....)))))))))))...(((((........)))))))))(((((((.........(((.(....))))..(((....)))..)))))))..... (-36.08 = -38.44 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:04 2006