Locus 5874

Sequence ID 2R_DroMel_CAF1
Location 18,571,723 – 18,571,825
Length 102
Max. P 0.683359
window9431

overview

Window 1

Location 18,571,723 – 18,571,825
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 87.71
Mean single sequence MFE -39.30
Consensus MFE -30.68
Energy contribution -31.77
Covariance contribution 1.09
Combinations/Pair 1.17
Mean z-score -2.55
Structure conservation index 0.78
SVM decision value 0.31
SVM RNA-class probability 0.683359
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18571723 102 - 20766785
ACAAAUGGAGCACGAGGUGGCUGUUUCAGGAGGGGAUUCCUCGCUGGAGGAGAUCACUGGCAGUUCGAAACUCAAGCCCUCCAAGAACACGGCCAUCAAGUG
..........(((..((((((((((((.((((((((((((((....))))).))).((.(.(((.....)))).))))))))..))).)))))))))..))) ( -38.90)
>DroSec_CAF1 51482 102 - 1
ACAAAUGGAGCACGAGGUGGCUGUUUCAGGAGGGGAUUCCUCGCAGGAGGAGAUCACUGGCAGUUCGCCACUCAAGCCCUCCAAGAACACGGCCAUCAAGUG
..........(((..((((((((((((.((((((((((((((....))))).)))..((((.....))))......))))))..))).)))))))))..))) ( -44.20)
>DroSim_CAF1 47367 102 - 1
ACAAAUGGAGCACGAGGUGGCUGUUUCAGGAGGGGAUUCCUCGCAGGAGGAGAUCACUGGCAGUUCGCCACUCAAGCCCUCCAAGAACACGGCCAUCAAGUG
..........(((..((((((((((((.((((((((((((((....))))).)))..((((.....))))......))))))..))).)))))))))..))) ( -44.20)
>DroEre_CAF1 53501 102 - 1
ACAAAUGGAGCACGAGGUGGCUGUUCCAGGAGGAGAUUCCUCGCCGGAGGAAGUCAUUUGCAGUUCGCAACUGAAGCCCUCCAACAACACGGCCAUUAAGUG
..........(((..(((((((((.....((((.....))))...(((((...(((.((((.....)))).)))...)))))......)))))))))..))) ( -37.80)
>DroYak_CAF1 53276 102 - 1
ACAAAUGGAGCACGCGGUGGCUGUUUCAGGAGAGGAUUCCUCGCCGGAGCAGAUCAUUUGCAGUUCGCAACUCAAGCCCUCCAACAACACGGCCAUCAAGUG
..........(((..(((((((((....((.((((...)))).))((((........((((.....))))........))))......)))))))))..))) ( -32.39)
>DroAna_CAF1 48657 102 - 1
ACAAAUGGAGCACGAGGUGGCUGUUGCUGGAGAGGAUUUCCCCGCGGUGGAAGUCAAAGCCAGUCCCAAGCUCAAACCCUCGGCCAACACGGCCAUCAAGUG
..........(((((((((((((..(((((....((((((((....).)))))))....)))))..).))).))...))))((((.....)))).....))) ( -38.30)
>consensus
ACAAAUGGAGCACGAGGUGGCUGUUUCAGGAGGGGAUUCCUCGCCGGAGGAGAUCACUGGCAGUUCGCAACUCAAGCCCUCCAACAACACGGCCAUCAAGUG
..........(((..(((((((((....((((((((((((((....)))).))))..((((.....))))......))))))......)))))))))..))) (-30.68 = -31.77 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:59 2006