Locus 5873

Sequence ID 2R_DroMel_CAF1
Location 18,568,970 – 18,569,087
Length 117
Max. P 0.931719
window9430

overview

Window 0

Location 18,568,970 – 18,569,087
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.85
Mean single sequence MFE -23.70
Consensus MFE -15.56
Energy contribution -16.76
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -2.46
Structure conservation index 0.66
SVM decision value 1.22
SVM RNA-class probability 0.931719
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18568970 117 - 20766785
AUGUAGGAAUUGUA---GAAGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAACGCUCUUUCAACAGUAAAUUUCCAAUGCUAAAGUUUAUAUUGUCCGGACAAUAAGAAACUUAGC
.....((((((((.---((((((....((((.....)))).........(((....))))))))).))))).....)))...(((((.((((.((((((....))))))..))))))))) ( -27.80)
>DroSec_CAF1 48746 108 - 1
---------AUGUA---GAAGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAACGCUCAUUCAACAGUAAAUUUCCAAUGCUAAAGUUUAUAUUGUCCGGACAAUAAGAAACUUAGC
---------.....---...((((((..((((.((((....))))....(((....)))..........))))))))))...(((((.((((.((((((....))))))..))))))))) ( -23.90)
>DroSim_CAF1 44638 108 - 1
---------AUGUA---GAAGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAACGAUCUUUCAACAGUAAAUUUCCAAUGCUAAAGUUUAUAUUGUCCGGACAAUAAGAAACUUAGC
---------.(((.---((((((....((((.....))))..........((....)).)))))).))).............(((((.((((.((((((....))))))..))))))))) ( -20.40)
>DroEre_CAF1 50719 108 - 1
-U-----------AUAAAGGGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAACGCUCUUUCAACAGUAAAUUUCCAUGUUUAAAGUUAUUAUUGUCAUAACAAUAAGAAACUUCAC
-.-----------.....(((.((((.((((.....)))).)))).)))(((....)))..(((((((..(((((......)))))..))).(((((((....)))))))))))...... ( -21.80)
>DroYak_CAF1 50512 118 - 1
AUAUUGGAAUUGCAAGAGGGGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAAGGUUCUUUCAACAGUAAAUUUCCAUGUUUAAAGUUAUUAUUGUCGUGACAAUAAGAAACU--AC
....(((((((((....(.(((((((.((((.....)))).)))).))).).(((((...)))))....))))..))))).......((((.(((((((....)))))))..))))--.. ( -24.60)
>consensus
_U_______AUGUA___GAAGGAAAUAGUUACAAAAUAAUAAUUUACCCGCGGAAACGCUCUUUCAACAGUAAAUUUCCAAUGCUAAAGUUUAUAUUGUCCGGACAAUAAGAAACUUAGC
....................((((((..((((.((((....))))....(((....)))..........))))))))))...(((((..(((.((((((....)))))).)))..))))) (-15.56 = -16.76 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:57 2006