Locus 5872

Sequence ID 2R_DroMel_CAF1
Location 18,562,956 – 18,563,060
Length 104
Max. P 0.794959
window9429

overview

Window 9

Location 18,562,956 – 18,563,060
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 90.99
Mean single sequence MFE -37.92
Consensus MFE -32.02
Energy contribution -33.34
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.84
SVM decision value 0.60
SVM RNA-class probability 0.794959
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18562956 104 - 20766785
UGCCGGAGCUCUGCCGCCGCCGACGUCGACGUCGGUGGCAACAGGUCGCCGUCGCGAACACAGAUACACACUGGCACACUGGCAAAAGCCAAGCUUCGGGUCGA
..((((((((.((((((((((((((....))))))))))....(.((((....)))).).............))))...((((....))))))))))))..... ( -49.90)
>DroSec_CAF1 42751 99 - 1
UGCCGGAGCUCUGCCGCCGUUGACGACGACGUCGGUGGCAACAGGUCGCCGUCGCGAGCACAGAUACACACUGGCACA-----AAAAGCCAAGCUUCGGGUCGA
..(((((((((((..((((..((((....))))..))))....(.((((....)))).).)))).......((((...-----....)))).)))))))..... ( -40.80)
>DroSim_CAF1 38645 99 - 1
UGCCGUAGCUCUGCCGCCGUCGACGUCGACGUCGGUGGCAACAGGUCGCCGUCGCGAACACAGAUACACACUGGCACA-----AAAAGCCAAGCUUCGGGUCGA
..(((.(((((((..(((..(((((....)))))..)))....(.((((....)))).).)))).......((((...-----....)))).))).)))..... ( -37.40)
>DroEre_CAF1 44786 93 - 1
UGCCGACGCUCUGCCGACGCCGA------CGUCGGUGGCAACAGGUCGCCGUCGCGAACACAGAUACACACUGACACA-----AAAAGCCAAGCUUCGGGUCGA
..((((.(((..(((((((....------)))))))(((....(.((((....)))).).(((.......))).....-----....))).))).))))..... ( -31.40)
>DroYak_CAF1 44487 99 - 1
UGCCGUCUCUCUGCCGACGCCGACGUCGACGUCGGUGGCAACAGGUCGCCGUCGCGAACACAGAUACACACUGACACA-----AAAAGCCAAGCUUCGGGUCGA
...((.(((...(((((((.((....)).)))))))(((....(.((((....)))).).(((.......))).....-----....))).......))).)). ( -30.10)
>consensus
UGCCGGAGCUCUGCCGCCGCCGACGUCGACGUCGGUGGCAACAGGUCGCCGUCGCGAACACAGAUACACACUGGCACA_____AAAAGCCAAGCUUCGGGUCGA
..((((((((..((.((((((((((....))))))))))....(.((((....)))).).(((.......)))..............))..))))))))..... (-32.02 = -33.34 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:56 2006