| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,549,200 – 18,549,294 |
| Length | 94 |
| Max. P | 0.598838 |
| Location | 18,549,200 – 18,549,294 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -27.25 |
| Consensus MFE | -17.53 |
| Energy contribution | -17.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18549200 94 - 20766785 CUGC------UGC-----------CUGU----CUUUU---GUAACGUGGCCAGAACGUUGC-CG-GGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGUAC .(((------(((-----------(.((----((...---(((((((.......)))))))-.)-)))((((((((..(((((((....)))))))..)))))))).....))).)))). ( -25.50) >DroVir_CAF1 35410 109 - 1 CUGU------UGCAGUCACAGUCACAGUCGCAGUUCC---GUAACGUGGCCAGAACGUUGC-CG-GGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGCAC ((((------.((.......)).))))..((.((((.---(((((((.......)))))))-.)-)))((((((((..(((((((....)))))))..))))))))..........)).. ( -27.90) >DroGri_CAF1 33126 110 - 1 UUGU------UGCAGUUGCAGUUGCAGUUGCAGUUCC---GUAACGUGGCCAGAACGUUGCGCG-GGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGCAC ....------((((..(((....)))..))))(((((---(((((((.......)))))))).)-)))((((((((..(((((((....)))))))..)))))))).............. ( -34.00) >DroEre_CAF1 30711 89 - 1 CUGC------UGC-----------CUGU----CUUUU---GUAACGUGGCCAGAACGUUG-------CAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGUAC .(((------(((-----------(...----.....---(((((((.......))))))-------)((((((((..(((((((....)))))))..)))))))).....))).)))). ( -22.80) >DroWil_CAF1 45287 111 - 1 UUGUUGUUGUUGCAGUAU-UG---GUGU----CUUCCGUAGUAACGUGGCCAGAACGUUGC-CGGGGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGUAC ..(((.(.((..(..(((-((---(...----...)))..)))..)..)).).))).((((-((.((.((((((((..(((((((....)))))))..)))))))).)).)))))).... ( -26.60) >DroMoj_CAF1 38082 97 - 1 CAGU------UGCU------------GUCGUAGUUCC---GUAACGUGGCCAGAACGUUGC-CG-GGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGCAC ....------((((------------..(((.((((.---(((((((.......)))))))-.)-)))((((((((..(((((((....)))))))..))))))))...)))..).))). ( -26.70) >consensus CUGU______UGCA__________CUGU____CUUCC___GUAACGUGGCCAGAACGUUGC_CG_GGCAAUUAUUAUUUUGUAAGACGUUUUACAAUUUAAUGGUUUUCAUGGUAAGCAC ..........(((...........................(((((((.......)))))))....((.((((((((..(((((((....)))))))..)))))))).)).......))). (-17.53 = -17.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:51 2006