| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,997,442 – 2,997,552 |
| Length | 110 |
| Max. P | 0.569362 |
| Location | 2,997,442 – 2,997,552 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -43.63 |
| Consensus MFE | -30.36 |
| Energy contribution | -30.28 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2997442 110 - 20766785 C-CCAUUGGCAGCGGUGCCCGCAGCAAUCCGAAGAUGUCGCCAGAGUCAUCUAACAACUCGAGCAUCAGCUGCGGUUGGUGCGAGGUUAGUGCUUCAAUACGCUGCCUGGA .-(((..((((((((..((((((((.(((....)))...((..((((.........))))..))....))))))...))..)(((((....)))))....)))))))))). ( -44.70) >DroVir_CAF1 1711 111 - 1 CGCGAUUGGCAGCGGCGCCACGCGCCAUUCAAAAAUGUCACCGGAAUCGUCAAACAACUCGAGCAUCAGCUGCGGCUGGUGCGAGGUGAGCGCCUCGAUACGCUGCCUGGA .......(((((((((((...))))).........((((.......(((..........)))((((((((....))))))))(((((....))))))))).)))))).... ( -46.20) >DroGri_CAF1 1747 110 - 1 C-CCAUUGGCAGCGGUGCGUCGCGCAGCUCCAAAAUGUCACCGGAAUCGUCAAACAACUCGUCGAUCAGCUGUGGCUGGUGCGAGGUGAGCGCCUCGAUCCGUUGCCUCGA .-.....((((((((..((..((((...(((...........))).........((.(((((..((((((....))))))))))).)).))))..))..)))))))).... ( -42.80) >DroMoj_CAF1 1711 110 - 1 C-CGAUCGGAAGUGGCGCCUCGCGUCACUCGAAGAUGUCCCCGGAGUCGUCAAACAACUCGAGCAUCAGCUGUGGCUGGUGCGAGGUGAGCGCCUCGAUCCGUUGCUUGGA (-(((.((((.(.(((((.((((.((..((((.(((.((....)))))((......))))))((((((((....)))))))))).))))))))).)..))))....)))). ( -46.50) >DroAna_CAF1 1768 110 - 1 C-CCAUUGGUAGUGGGGCGCGUAGCAAUCCCAAAAUGUCACCCGAGUCCUCGAACAACUCGAGCAUUAGCUGCGGCUGGUGCGAGGUGAGCGCCUCGAUACGCUGCCUCGA .-.....(((((((((((((...(......)......((((((((((.........))))).((((((((....))))))))..)))))))))))).....)))))).... ( -41.90) >DroPer_CAF1 1261 110 - 1 C-CCAUUGGAAGCGGGCCGCGCAGCAACCCAAAGAUGUCUCCAGAGUCUUCCAACAACUCGAGCAUCAGCUGCGGCUGGUGCGAGGUGAGCGCCUCCAUACGCUGCCUCGA .-...(((((((((((..((...))..))).......((....))).)))))))........((((((((....))))))))(((((.((((........))))))))).. ( -39.70) >consensus C_CCAUUGGCAGCGGCGCCCCGAGCAACCCAAAAAUGUCACCGGAGUCGUCAAACAACUCGAGCAUCAGCUGCGGCUGGUGCGAGGUGAGCGCCUCGAUACGCUGCCUCGA .......(((((((.............................((((.........))))..((((((((....))))))))(((((....)))))....))))))).... (-30.36 = -30.28 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:12 2006