Locus 5869

Sequence ID 2R_DroMel_CAF1
Location 18,548,900 – 18,548,997
Length 97
Max. P 0.629784
window9422

overview

Window 2

Location 18,548,900 – 18,548,997
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 75.31
Mean single sequence MFE -22.98
Consensus MFE -13.09
Energy contribution -13.57
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.57
SVM decision value 0.20
SVM RNA-class probability 0.629784
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18548900 97 + 20766785
CCGGAUCUUAUCUCCACCGCCAUAGUUAAUCUGGGAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAAGAG---AAGCAGAAA
..(((.(((...((((((.((.(((.....)))))..........(((((....)))))))).)))...)))))).((((((......---..)))))). ( -24.80)
>DroSec_CAF1 28841 83 + 1
CCGGA--------------CCAUAGUUAAUCUGGGAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAAGAG---AAGCAGAAA
..(((--------------(..(((.....)))(((.((.(((..(((((....)))))))).)).)))..)))).((((((......---..)))))). ( -24.30)
>DroEre_CAF1 30399 97 + 1
CCGGAUCUUAUCUUUGCCGACAUAGUUAAUCUGGGAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAAGAG---AAGCAGAAA
..(((.(((.......(((((...........((.......)).((((((....)))))))))))....)))))).((((((......---..)))))). ( -27.50)
>DroYak_CAF1 30081 97 + 1
CCGGAUCUUAUCUCUACCGACAUAGUUAAUCUGAGAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAAGAG---AAGCAGAAA
..(((.(((.......(((((..........(((....)))...((((((....)))))))))))....)))))).((((((......---..)))))). ( -25.60)
>DroMoj_CAF1 37657 75 + 1
----------------------UAUAUAAUACCGAAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCCAGUCCAUUCUGAAAGCAA---AGAGGAAGA
----------------------...................((((.((((((..(((((((.(........).)).)))))..)))))---))))).... ( -22.10)
>DroAna_CAF1 26409 85 + 1
--------UAUUUCUAC------UCUUAACCU-CGAGCUUACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAACAAACAAAAAGGAAA
--------..(((((..------......(((-(.(((...........)))....))))...((((....))))...................))))). ( -13.60)
>consensus
CCGGA___UAUCUCUAC___CAUAGUUAAUCUGGGAACUCACCUCCUUUGCUGACAGAGGGUCGGAUCCAAGUCCAUUCUGCAAAGAG___AAGCAGAAA
...........................................(((((((....)))))))..((((....)))).((((((...........)))))). (-13.09 = -13.57 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006