Locus 5868

Sequence ID 2R_DroMel_CAF1
Location 18,548,592 – 18,548,688
Length 96
Max. P 0.564161
window9421

overview

Window 1

Location 18,548,592 – 18,548,688
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -19.86
Consensus MFE -10.57
Energy contribution -12.30
Covariance contribution 1.73
Combinations/Pair 1.22
Mean z-score -2.08
Structure conservation index 0.53
SVM decision value 0.06
SVM RNA-class probability 0.564161
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18548592 96 - 20766785
AACUAAUUGUUAUUGCCUGCAAUUUGUCUUCAAUAUCAGUCAAGUACAGCUCAUUAGGGCCCAUCGGUUUCAUGAGCCACAAUUACCACCGAAAAA-
...(((((((..(((.(((....(((....)))...))).))).....((((((..(((((....))))).)))))).)))))))...........- ( -17.70)
>DroSec_CAF1 28556 95 - 1
AACUAAUUGUUAUUGGCUGCAAUUUGACUUAAAUUUCAGUCAAGUACAGCUCAUUAGGGCCCAUCGGUUUCAUGAGCCACAAUUACCACCGAAA-A-
...(((((((..(((((((.((((((...)))))).))))))).....((((((..(((((....))))).)))))).))))))).........-.- ( -23.40)
>DroEre_CAF1 30088 97 - 1
AACUAAUUGUUAUUGGCUGCAAUUUGUCUUCAAUAUCAGUCAAGUACAGCUCAUUAGGGCCCAUCGGUUUCAUAGGCCACAAUUACCACCAAAAAAA
...(((((((((.((((((..(((((.((........)).))))).)))).)).)).((((.............)))))))))))............ ( -19.02)
>DroYak_CAF1 29784 97 - 1
AACUAAUUGUUAUUGGCUGCAAUUUGUCUUCAAUAUCAGUCAAGUACAGCUCAUUAGGGCCCAUCGCUUUCAUGAGCAACAAUUACCACCAAAAAAG
...((((((((.(((((((....(((....)))...))))))).....((((((.(((((.....))))).))))))))))))))............ ( -26.60)
>DroAna_CAF1 26188 83 - 1
AAGUAAUUGUUAUUGGCCGCAAUUUGUCCUCCAUAUCUGUUAAAUUCA----AUUACAACCU-----UUU----UGCCAUGAUUAUGGCCUAAAAA-
..(((((((...(((((.(.....((.....))...).)))))...))----)))))....(-----((.----.(((((....)))))..)))..- ( -12.60)
>consensus
AACUAAUUGUUAUUGGCUGCAAUUUGUCUUCAAUAUCAGUCAAGUACAGCUCAUUAGGGCCCAUCGGUUUCAUGAGCCACAAUUACCACCAAAAAA_
...(((((((..(((((((....(((....)))...))))))).....((((((...((((....))))..)))))).)))))))............ (-10.57 = -12.30 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:49 2006