Locus 5865

Sequence ID 2R_DroMel_CAF1
Location 18,540,331 – 18,540,425
Length 94
Max. P 0.930924
window9417

overview

Window 7

Location 18,540,331 – 18,540,425
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 89.36
Mean single sequence MFE -41.67
Consensus MFE -32.15
Energy contribution -32.82
Covariance contribution 0.67
Combinations/Pair 1.07
Mean z-score -3.92
Structure conservation index 0.77
SVM decision value 1.21
SVM RNA-class probability 0.930924
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18540331 94 + 20766785
AUAAUUAAGGCAAGACGCUCGUUGGUUCGUUGGCUGCUUGGCUACUUGGCUGGCCAAGGCAAAGUCAGGCAGCCAACAGCUGCACUCGGGCCAC
........(((..((.((.....((((.(((((((((((((((.(((((....)))))....)))))))))))))))))))))..))..))).. ( -43.80)
>DroSec_CAF1 20416 86 + 1
AUAAUUAAGGCAAGACGCUCGUUGGCUGCCUGGCUA--------CUUGGCUGGCCAAGGCAAAGUCAUGCAGGCAACAGCUGCACUCGGGCCAC
........(((..((.(((.((((.((((.(((((.--------(((((....)))))....))))).)))).))))))).....))..))).. ( -35.10)
>DroSim_CAF1 20768 94 + 1
AUAAUUAAGGCAAGACGCUCGUUGGCUGCCUGGCUACUUGGCUACUUGGCUGGCCAAGGCAAAGUCAGGCAGGCAACAGCUGCACUCGGGCCAC
........(((..((.(((.((((.((((((((((.((((((((......))))))))....)))))))))).))))))).....))..))).. ( -46.10)
>consensus
AUAAUUAAGGCAAGACGCUCGUUGGCUGCCUGGCUACUUGGCUACUUGGCUGGCCAAGGCAAAGUCAGGCAGGCAACAGCUGCACUCGGGCCAC
........(((..((.(((.((((.((((((((((.........(((((....)))))....)))))))))).))))))).....))..))).. (-32.15 = -32.82 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:45 2006