| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,536,657 – 18,536,757 |
| Length | 100 |
| Max. P | 0.731503 |
| Location | 18,536,657 – 18,536,757 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.10 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -21.26 |
| Energy contribution | -22.43 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18536657 100 + 20766785 AAGGGAGGCGAAACA----------ACCAAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGGGUAUUUGCCGCAUUUAUUAAAAGCUCAUACCCUUCACCGAAAUGAUA (((((.((((((...----------......(((....))).....((((((((...)))))))).))))))((.(((....))))).....)))))............. ( -31.00) >DroSec_CAF1 16773 100 + 1 AAGGGAAGCGAAACA----------ACCAAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGGGUAUUUGCCGCAUUUAUUAAAAGCUCAUACCCUUCACCGAAAUGAUA (((((..(((((...----------......(((....))).....((((((((...)))))))).))))).((.(((....))))).....)))))............. ( -26.80) >DroSim_CAF1 17103 100 + 1 AAGGGAGGCGAAACA----------ACCAAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGAGUAUUUGCCGCAUUUAUUAAAAGCUCAUACCCUUCACCGAAAUGAUA (((((.((((((...----------......(((....))).....((.(((((...))))).)).))))))((.(((....))))).....)))))............. ( -24.10) >DroEre_CAF1 17897 104 + 1 AAGGGAGGCAAAAAAAAA------AUCCCAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGGGUAUUUGCCGCAUUUAUUAAAAGCUUAUACCCUUCACCGAAAUGAUA (((((.((((((......------.......(((....))).....((((((((...)))))))).))))))((.(((....))))).....)))))............. ( -31.30) >DroYak_CAF1 17485 110 + 1 AAGGGAGGCAAAAAAAAAAAAACAAACCAAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGGGUAUUUGCCGCAUUUAUUAAAAGCUCAUACCCUUCACCGAAAUGAUA (((((.((((((...................(((....))).....((((((((...)))))))).))))))((.(((....))))).....)))))............. ( -31.30) >DroPer_CAF1 18083 101 + 1 GAGAGGGGUAAGAGC--A------CUGAGAGCCAGAGACGAACCGAACCCGGAGCUGCUUUA-CCAUUUGCCGCAUUUAUUAAAAUCGUAUACCCUACACAAGAAGAACG ..(.((((((.....--.------(((.....)))..((((.(((....))).((.((....-......)).))...........)))).)))))).)............ ( -21.30) >consensus AAGGGAGGCAAAACA__________ACCAAGUCGGAGACGAACCAAACCCGGAGCUGCUCUGGGUAUUUGCCGCAUUUAUUAAAAGCUCAUACCCUUCACCGAAAUGAUA (((((.((((((...................(((....))).....((((((((...)))))))).))))))((...........)).....)))))............. (-21.26 = -22.43 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:41 2006