| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,530,430 – 18,530,548 |
| Length | 118 |
| Max. P | 0.824785 |
| Location | 18,530,430 – 18,530,548 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.17 |
| Mean single sequence MFE | -38.17 |
| Consensus MFE | -22.88 |
| Energy contribution | -22.63 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18530430 118 - 20766785 AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGA--CCAGGCCAAAACCCAUGGUCGCGAACUGAAACAGAAACGAUGCCA .(((((((.((..((((((((((((.(((((((.....)).))))).))))))))).)))..))....((.((--(((((.......)).))))).)).....))))))).......... ( -39.00) >DroVir_CAF1 10215 107 - 1 AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAGCCGCAG-CCCC---AGUCGAUGGCGAUGUCGAUGUCG----A----- ......(((((..((((((((((((.(((((((.....)).))))).))))))))).)))..((..((.((....)).)-).))---.......)))))..(((....))----)----- ( -32.50) >DroWil_CAF1 14947 105 - 1 AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAAA-CCA-UCCAU---UGAUGAUGGGGAAGUGGGAGAGA---------- .((..(((.((((((((((((((((.(((((((.....)).))))).))))))))).)))..(((((.......-.))-)))..---......)))).)))..)).....---------- ( -37.00) >DroYak_CAF1 11119 118 - 1 AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGA--CCUGGCCAAAACCCAUGGUCGCGAACUGAAACAGAAACGAAGUCG .(((((((.((..((((((((((((.(((((((.....)).))))).))))))))).)))..))....((.((--(((((.......))).)))).)).....))))))).......... ( -39.00) >DroMoj_CAF1 13182 107 - 1 AUUUGUUUGCCCUGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAGCCCCAG-UCGA---UGUCGAUGUCGAUGUCGAUGUCG----A----- ..((((..(((((((((((((((((.(((((((.....)).))))).))))))))).)).))))..)).))))......-((((---(((((((......))))))))))----)----- ( -39.30) >DroAna_CAF1 9924 116 - 1 AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGACCCCGGUC--CCGGGGCAG--GCCAUACUGGGAGAGUGCAGCAGAAAUGGAUUUG ..((((...(((((..(((((((((.(((((((.....)).))))).)))))))))..(((..(.(((((...--.)))))).)--))....))))).....))))((....))...... ( -42.20) >consensus AUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUCCCGCAA__CCAGGCCAA___CCAUGAUGGCGAAGUGGAACAGA____A_____ .........((..((((((((((((.(((((((.....)).))))).))))))))).)))..))........................................................ (-22.88 = -22.63 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:38 2006