Locus 586

Sequence ID 2R_DroMel_CAF1
Location 2,995,294 – 2,995,409
Length 115
Max. P 0.958327
window1064

overview

Window 4

Location 2,995,294 – 2,995,409
Length 115
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 73.23
Mean single sequence MFE -34.02
Consensus MFE -21.51
Energy contribution -21.60
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 1.49
SVM RNA-class probability 0.958327
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2995294 115 + 20766785
GGCAUUAUGGCCACAUCGCAAGUGCGAUCUUUCUCGUCCAGCGUGGGCGGCAUCAAGGGAUUGAUGGAGGGUCGCACCUCGAUCUAAAUUG-GGGAACGCAAUAAUACCAUGUUAG
(((......))).....((...((((((((((.((((((.....))))))((((((....))))))))))))))))(((((((....))))-)))...))................ ( -40.00)
>DroVir_CAF1 21145 107 + 1
GGCAUCAAAGCCACAUCGCAGGUGCGAUCCUUUUCAUCCAACGUCGGCGGCAUUAGCGGAUUUAUCGAUGGACGCACCUCGAUCUGAUUAACAAAAAAAAA---AAAACA------
(((......)))..((((.(((((((.(((...((((((..((....))((....)))))).....)).))))))))))))))..................---......------ ( -30.40)
>DroGri_CAF1 19871 106 + 1
GGCAUCAAGGCCACAUCGCAUGUGCGAUCCUUUUCAUCCAGCGUUGGCGGCAUCAACGGAUUUAUGGAGGGACGCACCUCGAUCUAUA-CUCGAAAUUAGG---AUUACA------
(((......)))...((((....))))((((((((......((((((.....)))))).((..((.((((......)))).))..)).-...))))..)))---).....------ ( -27.30)
>DroEre_CAF1 19729 112 + 1
GGCAUAAUGGCCACAUCGCAAGUGCGAUCUUUCUCGUCCAGCGUGGGCGGCAUCAAGGGAUUGAUGGAGGGUCGCACCUCGAUCUAUGUUG-GAGGAUACA---AAACAAUGUUAA
(((......)))..(((((....))))).....((.((((((((((((..((((((....))))))((((......))))).)))))))))-)).))....---............ ( -39.90)
>DroWil_CAF1 19922 110 + 1
GGCAUGAGGGCCACAUCGCAAGUGCGAUCCUUUUCAUCCAAAGUGGGUGGCAUUAAUGGAUUAAUAGAAGGACGCACUUCGAUCUAUUUAA---AAGGUAA---AUCACAAAUUAA
(((......)))..((((.(((((((.((((((((((((.....)))))..(((((....)))))))))))))))))))))))........---.......---............ ( -31.40)
>DroAna_CAF1 18970 103 + 1
GGCAUAAGGGCCACGUCGCAGGUGCGAUCCUUCUCGUCCAGGGUGGGUGGCAUCAGCGGAUUUAUGGAGGGACGCACCUCAAUCUAAAA------AAUAGA-------AAUAUUAG
(((......))).....(.(((((((.(((((((.((((..((((.....))))...))))....))))))))))))))).........------((((..-------..)))).. ( -35.10)
>consensus
GGCAUAAAGGCCACAUCGCAAGUGCGAUCCUUCUCAUCCAGCGUGGGCGGCAUCAACGGAUUUAUGGAGGGACGCACCUCGAUCUAAAUAA_GAAAAUAAA___AUAACAU_UUA_
(((......)))..((((...(((((.(((((((.((((...(((.....)))....))))....))))))))))))..))))................................. (-21.51 = -21.60 +   0.09) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006