Locus 5859

Sequence ID 2R_DroMel_CAF1
Location 18,524,099 – 18,524,193
Length 94
Max. P 0.530819
window9409

overview

Window 9

Location 18,524,099 – 18,524,193
Length 94
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -16.08
Consensus MFE -11.22
Energy contribution -11.50
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.70
SVM decision value -0.01
SVM RNA-class probability 0.530819
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18524099 94 - 20766785
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUC-------------
((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-....------------- ( -19.00)
>DroVir_CAF1 4666 81 - 1
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUGG---------------------------
....(((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))).--------------------------- ( -12.70)
>DroGri_CAF1 4619 82 - 1
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUUCUUUUUAUUUAUUGUUUGG---------------------------
(((((((....................((((.....)))).....((((..........))))...........))))))).--------------------------- (  -9.80)
>DroWil_CAF1 5274 99 - 1
GAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUAGUUGGGUUUU-GCCC-UCGCU-------
..(((((((((.((((...........((((.....))))(((..((((..........))))-.))).....))))..)))).(((....-.)))-)))))------- ( -18.80)
>DroMoj_CAF1 6865 81 - 1
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUGG---------------------------
....(((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))).--------------------------- ( -12.70)
>DroAna_CAF1 4212 108 - 1
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGCUUCGUCUCCCCAGCUCUCAGC
...((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))))(((((.........)))))........ ( -23.50)
>consensus
CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU_UUGUAAUUUAUUGUUUGG___________________________
....(((((.((.((((((((......((((.....)))).....((((..........)))).)))))))).)).)))))............................ (-11.22 = -11.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:37 2006