Locus 5858

Sequence ID 2R_DroMel_CAF1
Location 18,521,546 – 18,521,644
Length 98
Max. P 0.597914
window9408

overview

Window 8

Location 18,521,546 – 18,521,644
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -31.58
Consensus MFE -19.17
Energy contribution -20.83
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.61
SVM decision value 0.13
SVM RNA-class probability 0.597914
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18521546 98 - 20766785
AACUGCAGCA---GCAGCAGCUGCAGUUUGGC-GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAACUGCAACUGCAACUGGAAC
........((---(..((((.(((((((.((.-(((((.((.(((((((...((....))....))))))))).)))))))))))))).))))..))).... ( -38.80)
>DroSec_CAF1 1817 89 - 1
GACGGCA------GCAGCAGCUGCAGUUUGGC-GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAACUGCAA------CUGGAAC
.......------....(((.(((((((.((.-(((((.((.(((((((...((....))....))))))))).)))))))))))))).------))).... ( -32.30)
>DroSim_CAF1 2049 89 - 1
GACGGCA------GCAGCAGCUGCAGUUUGGC-GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAACUGCAA------CUGGAAC
.......------....(((.(((((((.((.-(((((.((.(((((((...((....))....))))))))).)))))))))))))).------))).... ( -32.30)
>DroEre_CAF1 1818 101 - 1
GACGGCAGCAGCAGCAGCAGCUGCAGUUUGGC-GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAACUGCAACUGCAACUGGAAC
..(((..((....)).((((.(((((((.((.-(((((.((.(((((((...((....))....))))))))).)))))))))))))).))))..))).... ( -38.90)
>DroWil_CAF1 2205 83 - 1
--CCAUG------AUGGCAGCUGCU----GCU-GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCCGUCGCAA------GUUGAAG
--....(------((((((((....----)))-)((((.((.(((((((...((....))....))))))))).))))..)))))....------....... ( -24.10)
>DroAna_CAF1 1845 79 - 1
AACUGCA------ACGGCAGCUGCAGCUUGCCUGGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAAGU-----------------
..(((((------.(....).)))))((((...(((((.((.(((((((...((....))....))))))))).))))).)))).----------------- ( -23.10)
>consensus
GACGGCA______GCAGCAGCUGCAGUUUGGC_GGCAAUUGAUGUUGAUGUCGCGGGCGCCAAAAUCGACACACUUGUCCCAACUGCAA______CUGGAAC
.....................(((((.((((..(((((.((.(((((((...((....))....))))))))).)))))))))))))).............. (-19.17 = -20.83 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:36 2006