Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,514,780 – 18,514,873 |
Length | 93 |
Max. P | 0.999960 |
Location | 18,514,780 – 18,514,873 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.22 |
Mean single sequence MFE | -41.46 |
Consensus MFE | -38.54 |
Energy contribution | -38.78 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -3.07 |
Structure conservation index | 0.93 |
SVM decision value | 4.90 |
SVM RNA-class probability | 0.999960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18514780 93 - 20766785 GGAGUGGGACUCGGGCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUACACACAUA-- ...(((.(((((((.(((((.((.(....).))..(((((........))))).))))).)))))))..((((.....))))...))).....-- ( -36.90) >DroSec_CAF1 13782 90 - 1 --AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CACAUA-- --.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))...-- ( -44.50) >DroSim_CAF1 12006 90 - 1 --AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CACAUA-- --.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))...-- ( -44.50) >DroEre_CAF1 16971 89 - 1 --AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CGCAU--- --.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))..--- ( -44.10) >DroYak_CAF1 19590 92 - 1 --AGUGGGACUCGGCCAAAAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGA-CACAUACA --.(((.(((((((((((.(.((.(....).)).)(((((........)))))...)))))))))))..((((.....))))....-)))..... ( -37.30) >consensus __AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC_CACAUA__ ...(((.(((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....)))).....)))..... (-38.54 = -38.78 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:30 2006