Locus 5853

Sequence ID 2R_DroMel_CAF1
Location 18,514,027 – 18,514,134
Length 107
Max. P 0.624571
window9399

overview

Window 9

Location 18,514,027 – 18,514,134
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -24.86
Consensus MFE -21.88
Energy contribution -21.80
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.23
Structure conservation index 0.88
SVM decision value 0.19
SVM RNA-class probability 0.624571
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18514027 107 - 20766785
GACCGAAACGCGCGCACAAUUAACAUGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCAAAAGAGCAGGAAACAAAUUAACUUUUACAGGUGCAAGUACGGUAU
.((((..((..((((..........((((....((((..(((.....)))..))))..))))........(....)................))))..)).)))).. ( -25.10)
>DroSec_CAF1 13029 107 - 1
GACCGAAACGCGCGCACAAUUAACAUGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCAAAAGAGCAGGAAACAAAUUAACUUUUACAGGUGCAAGUACGGUGU
.((((..((..((((..........((((....((((..(((.....)))..))))..))))........(....)................))))..)).)))).. ( -25.10)
>DroSim_CAF1 11262 107 - 1
GACCGAAACGCGCGCACAAUUAACACGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCGAAAGAGCAGGAAACAAAUUAACUUUUACAGGUGCAAGUACGGUGU
.((((..((..((((.............((....))...((((((((((.........(((....).)).(....)....))))))))))..))))..)).)))).. ( -28.10)
>DroEre_CAF1 16219 107 - 1
AACCGAAGCGCGCACUCAAUUAACAUGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCAAAAGAGCAGGAAACAAAUUAACUUUUACAGGUGCAAAUACUGUGU
...........(((((.........((((....((((..(((.....)))..))))..))))........(....)...............)))))........... ( -20.90)
>DroYak_CAF1 18813 107 - 1
AGCCGAAACGCGCACUCAAUUAACAUGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCAAAAGAGCAGGAAACAAAUUAAGUUAUACAGGUGCAAAUACUGUGU
.((......))(((((....((((.((((....((((..(((.....)))..))))..))))........(....).......))))....)))))........... ( -25.10)
>consensus
GACCGAAACGCGCGCACAAUUAACAUGGCCAUCAGGGAAGUAAAAGUUGCAACCCUUCGCCAAAAGAGCAGGAAACAAAUUAACUUUUACAGGUGCAAGUACGGUGU
.((((....((((............((((....((((..(((.....)))..))))..))))........(....)................)))).....)))).. (-21.88 = -21.80 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:28 2006