Locus 585

Sequence ID 2R_DroMel_CAF1
Location 2,988,911 – 2,989,012
Length 101
Max. P 0.664900
window1063

overview

Window 3

Location 2,988,911 – 2,989,012
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -31.87
Consensus MFE -19.84
Energy contribution -20.15
Covariance contribution 0.31
Combinations/Pair 1.23
Mean z-score -1.74
Structure conservation index 0.62
SVM decision value 0.28
SVM RNA-class probability 0.664900
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2988911 101 + 20766785
UUAAUG---GGGGUCUUCGGCGCUAAUCACAGGUC-------------GCAGAUGCAC--ACGCAUUCCCGGCCCAAAGUCACCA-GAUAAUGGUGAUGGAUGCCAGCCACCUCUCUACU
.....(---(((((....(((....(((...((((-------------(..(((((..--..)))))..)))))....(((((((-.....))))))).)))....)))))))))..... ( -36.00)
>DroSec_CAF1 13488 101 + 1
UUAAUG---GGGGUCUUCGGCACUAAUCACAGGUC-------------GCAGAUGCAC--ACGCAUUCCCGGCCCAAAGUCACCA-GAUAAUGGUGAUGGAUGCCAGCCACCUCUCUACU
.....(---(((((....((((((.......((((-------------(..(((((..--..)))))..)))))....(((((((-.....))))))))).))))....))))))..... ( -35.70)
>DroSim_CAF1 13487 101 + 1
UUAAUG---GGGGUCUUCGGCACUAAUCACAGGUC-------------GCAGAUGCAC--ACGCAUUCCCGGCCCAAAGUCACCA-GAUAAUGGUGAUGGAUGCCAGCCACCUCUCUGCU
.....(---(((((....((((((.......((((-------------(..(((((..--..)))))..)))))....(((((((-.....))))))))).))))....))))))..... ( -35.70)
>DroEre_CAF1 13873 100 + 1
CUAAUG---GGGGUCUUCGGCACUAAUCGCGGGUC-------------GUAGAUGCAC--ACGCAUUCCCGGC-UAAAGUCACCA-GAUAAUGUUGAUGGAUGCCAGCCACCUCUCUACU
.....(---(((((....(((.........(((..-------------...(((((..--..))))))))(((-....((((.((-.....)).))))....))).)))))))))..... ( -28.70)
>DroYak_CAF1 13901 101 + 1
UUAAUG---GGGGUCUUCGGCACUAAUCACAGGUC-------------ACAGAUGCAC--ACGCAUUCCCGGCCCAAAGUCACCA-GAUAAUGGUGAUGGAUGCCAGCCACCUUCCUACU
.....(---(((((....((((((.......((((-------------...(((((..--..)))))...))))....(((((((-.....))))))))).))))....))))))..... ( -31.40)
>DroAna_CAF1 12777 116 + 1
UUAUUUUUUUGGG-UUUAGGCUCCA--CACAGAUCUUCUCUCGAUCUAUCAGAUGCACAUACGCAUUCUUAGCCCAAAGACAAAACAAUAAUUAAGAUUGAUU-AAGCCGGGUUGUGACU
.....((((((((-((.((......--...(((((.......)))))....(((((......))))))).))))))))))....(((((..((((......))-)).....))))).... ( -23.70)
>consensus
UUAAUG___GGGGUCUUCGGCACUAAUCACAGGUC_____________GCAGAUGCAC__ACGCAUUCCCGGCCCAAAGUCACCA_GAUAAUGGUGAUGGAUGCCAGCCACCUCUCUACU
.........((((.....(((..............................(((((......)))))...(((.....(((((((......)))))))....))).)))....))))... (-19.84 = -20.15 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:10 2006