Locus 5849

Sequence ID 2R_DroMel_CAF1
Location 18,502,754 – 18,502,852
Length 98
Max. P 0.520265
window9393

overview

Window 3

Location 18,502,754 – 18,502,852
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 84.02
Mean single sequence MFE -21.32
Consensus MFE -12.90
Energy contribution -13.90
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -1.83
Structure conservation index 0.60
SVM decision value -0.03
SVM RNA-class probability 0.520265
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18502754 98 - 20766785
AAAUCGAUGCAAUGCAGUUUUAAACAGGGUUUGUUGUGCUUUGAGAAUGAAACGAAUGUAAUUGCGCCAUGGAACGCAAUUGCAAAUUGUAAUUGAAA
...((((((((((...((((((..((((((.......))))))....))))))...((((((((((........)))))))))).))))).))))).. ( -26.20)
>DroSec_CAF1 1946 96 - 1
AAAUCGAUGCAAUGCAGUUUUAAACAGGGUUUGUUGUGCUUUCAGAAUGAAACGAAUGUAAUUGC--AAUGGAACGCAAUUGCAAAUUGUAAUUGAAA
...((((((((((...((((((...(((((.......))))).....))))))...(((((((((--........))))))))).))))).))))).. ( -21.10)
>DroEre_CAF1 4746 94 - 1
AAAUCGAUACAAUGCAGUUUUAAGCAGCGUUUGUUGUGCUUUGAACACGAUA--UAUGUUAUUGC--CAUGGAACGCAAUUGAAAAUUGUAAUUGAAA
...(((((....(((((((((.....((((((..((.((....((((.....--..))))...))--))..)))))).....)))))))))))))).. ( -21.40)
>DroYak_CAF1 6983 86 - 1
AAAUCGAUGCAAUGCAGGUU----------UUGUUGUGCUUACCAAAUGAAACGAAUGCUAUUGC--CAUGGAACGCAAUUGUAAAUUGUAAUUGAAA
...(((((((((((((.(((----------(..((..........))..))))...))).)))))--........(((((.....))))).))))).. ( -16.60)
>consensus
AAAUCGAUGCAAUGCAGUUUUAAACAGGGUUUGUUGUGCUUUCAAAAUGAAACGAAUGUAAUUGC__CAUGGAACGCAAUUGCAAAUUGUAAUUGAAA
...(((((((((((((....(((((...)))))...))).................(((((((((..........))))))))).))))).))))).. (-12.90 = -13.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:22 2006