Locus 5846

Sequence ID 2R_DroMel_CAF1
Location 18,498,424 – 18,498,544
Length 120
Max. P 0.582098
window9384

overview

Window 4

Location 18,498,424 – 18,498,544
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -30.57
Consensus MFE -30.57
Energy contribution -30.57
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 1.00
SVM decision value 0.10
SVM RNA-class probability 0.582098
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18498424 120 + 20766785
AGAAACGAAAAUAACUCAAAGUGAAUACGAUGUGGGAGCAGCAAAACAUAAAUGCUUCCAAAUGCAUCGAGCACUCAAAGAGGGGUUCGGAUUUUCAGUUCGGCCACUUGAGCUCGUCCU
......(((.....(((..((((....(((((((((((((............)))))))....))))))..))))....)))...)))((((....(((((((....))))))).)))). ( -31.30)
>DroSec_CAF1 17071 120 + 1
AGAAACGAAAAUAACUCAAAGUGAAUACGAUGUGGGAGCAGCAAAACAUAAAUGCUUCCAAAUGCAUCGAACACUCAAAGAGGGGUUCGGAUUCUCAGUUCGGCCACUUGAGCUCGUCCU
......(((.....(((..((((....(((((((((((((............)))))))....))))))..))))....)))...)))((((....(((((((....))))))).)))). ( -30.20)
>DroSim_CAF1 6207 120 + 1
AGAAACGAAAAUAACUCAAAGUGAAUACGAUGUGGGAGCAGCAAAACAUAAAUGCUUCCAAAUGCAUCGAACACUCAAAGAGGGGUUCGGAUUCUCAGUUCGGCCACUUGAGCUCGUCCU
......(((.....(((..((((....(((((((((((((............)))))))....))))))..))))....)))...)))((((....(((((((....))))))).)))). ( -30.20)
>consensus
AGAAACGAAAAUAACUCAAAGUGAAUACGAUGUGGGAGCAGCAAAACAUAAAUGCUUCCAAAUGCAUCGAACACUCAAAGAGGGGUUCGGAUUCUCAGUUCGGCCACUUGAGCUCGUCCU
......(((.....(((..((((....(((((((((((((............)))))))....))))))..))))....)))...)))((((....(((((((....))))))).)))). (-30.57 = -30.57 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:14 2006