Locus 5842

Sequence ID 2R_DroMel_CAF1
Location 18,496,163 – 18,496,283
Length 120
Max. P 0.573317
window9370

overview

Window 0

Location 18,496,163 – 18,496,283
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.36
Mean single sequence MFE -36.30
Consensus MFE -32.97
Energy contribution -33.85
Covariance contribution 0.88
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.91
SVM decision value 0.08
SVM RNA-class probability 0.573317
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18496163 120 - 20766785
GUUCGAUUUAUUGUGCGCGUCGUGGGGACAACAUGUUUAAUUAACGAACACAAUGAAGGAGAGUCGCAACAACAGGAGUUUGUCACCGACUUUCGGUGAAAUUUCUGACUCUCUGGUGAC
......(((((((((..(((.....((((.....)))).....)))..)))))))))(((((((((......)(((((((..((((((.....)))))))))))))))))))))...... ( -38.70)
>DroSec_CAF1 14776 120 - 1
GUUCAAUUUGUUGUGCGCUUCGUGGGGACAACAUGUUUAAUUAACGAACACAAUGAAGGAGAGGCGCAACAACAGGAGUUUGUCACCGACUUUCGGUGAAAUUUCUGACUCUCUGGUGAC
..(((..(((((((((.((((.((....))...(((((.......))))).......))))..)))))))))((((((((..((((((.....)))))).......))))).))).))). ( -39.20)
>DroSim_CAF1 3917 120 - 1
GUUCGAUUUAUUGUGCGCUUCGUGGGGACAACAUGUUUAAUUAACGAACACAAUGAAGGAGAGGCGCAACAACAGGAGUUUGUCACCGACUUUCGGUGAAAUUUCUGACUCUCUGGUGAC
..........(((((((((((.((....))...(((((.......)))))..........))))))).))))((((((((..((((((.....)))))).......))))).)))..... ( -36.90)
>DroEre_CAF1 20297 120 - 1
GUUCGAUUUAUUGUGCGCUUCGUGGGGACAACAUGUUUAAUUAACGAACACAAUGAAGGAGAGUCGCAACAACAGGAGUUUGUCACCGACUUUACGUGAAAUUUCUGACUCUCUGGUGAC
......(((((((((...(((((..((((.....)))).....))))))))))))))(((((((((......)(((((((..((((.........)))))))))))))))))))...... ( -30.40)
>consensus
GUUCGAUUUAUUGUGCGCUUCGUGGGGACAACAUGUUUAAUUAACGAACACAAUGAAGGAGAGGCGCAACAACAGGAGUUUGUCACCGACUUUCGGUGAAAUUUCUGACUCUCUGGUGAC
..(((.(((((((((...(((((..((((.....)))).....))))))))))))))(((((((........((((((((..((((((.....)))))))))))))))))))))..))). (-32.97 = -33.85 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:01 2006