Locus 5841

Sequence ID 2R_DroMel_CAF1
Location 18,495,721 – 18,495,840
Length 119
Max. P 0.631448
window9369

overview

Window 9

Location 18,495,721 – 18,495,840
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.10
Mean single sequence MFE -19.62
Consensus MFE -16.90
Energy contribution -17.40
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.86
SVM decision value 0.20
SVM RNA-class probability 0.631448
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18495721 119 + 20766785
ACCCGAAACAGUUCAAAAGGCAACUGUUGCUCUUGAACCUU-UGGAAAAUCCACCGCUUCAAAUGCCGUUACACCCCCCGCCCCCCACACACGGCAAAGUUUUCAAAUAGAAAAUGUUUA
..(((((...((((((..((((.....)))).)))))).))-)))..................((((((.....................))))))..((((((.....))))))..... ( -21.60)
>DroSec_CAF1 14362 105 + 1
ACCCGAAACAGUUCAAAAGGCAACUGUUGCUCUUGAACCUU-UGCAAAAUCCACCGCUUCAAAUGCCA-----CCC---------CCCACACGGCAAAGUUUUCAAAUAGAAAAUGUUUA
.....(((((((((((..((((.....)))).))))))(((-(((..........((.......))..-----...---------........))))))(((((.....)))))))))). ( -17.60)
>DroSim_CAF1 3012 106 + 1
ACCCGAAACAGUUCAAAAGGCAACUGUUGCUCUUGAACCUU-UGGAAAAUCCACCGCUUCAAAUGCCA-----CCC--------CCCCACACGGCAAAGUUUUCAAAUAGAAAAUGUUUA
..(((.(((((((........)))))))((..(((((.(..-(((.....)))..).)))))..))..-----...--------.......)))....((((((.....))))))..... ( -20.20)
>DroEre_CAF1 19841 106 + 1
AACCGAAACAGUUCAAAAGGCAACUGUUGCUCUUGAACCUCUUGGAAAAUCCAACGCUCCAAAUGCCA-----CCC---------CCCACACGGCAAAGUUUUCAAAUAGAAAAUGUUUA
.....((((.((((((..((((.....)))).))))))...(((((...........))))).((((.-----...---------.......))))..((((((.....)))))))))). ( -19.10)
>consensus
ACCCGAAACAGUUCAAAAGGCAACUGUUGCUCUUGAACCUU_UGGAAAAUCCACCGCUUCAAAUGCCA_____CCC_________CCCACACGGCAAAGUUUUCAAAUAGAAAAUGUUUA
..(((.(((((((........)))))))((..(((((.(...(((.....)))..).)))))..)).........................)))....((((((.....))))))..... (-16.90 = -17.40 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:00 2006