Locus 584

Sequence ID 2R_DroMel_CAF1
Location 2,984,846 – 2,984,949
Length 103
Max. P 0.886797
window1062

overview

Window 2

Location 2,984,846 – 2,984,949
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.41
Mean single sequence MFE -23.93
Consensus MFE -15.20
Energy contribution -16.36
Covariance contribution 1.16
Combinations/Pair 1.18
Mean z-score -2.04
Structure conservation index 0.64
SVM decision value 0.94
SVM RNA-class probability 0.886797
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2984846 103 + 20766785
AACAAAAGCGGAAUAGAAUGAAGAUG---UGA----------AGAUUUCAAAUAACUUCCACGGCGAUUUUAAUUCCAG----UCCCGCUUGCUGGAAGUUAACCCACUUCCACUUUCCA
.........((((.((...((((...---(((----------.....)))..((((((((((((.((((........))----))))).....))))))))).....))))..)))))). ( -23.00)
>DroSec_CAF1 9435 103 + 1
AAUAAAAGCGGAAUAGAAUGAAGUUG---UGA----------AGAUUUCAAAUAACUUCCACGGCGCUUUUUAUUCCAG----UACCGCUUGCUGGAAGUUAACCCACUUCCACUUUCCA
.....((((((.((.(((((((((((---(((----------((.((......))))).))))))....)))))))..)----).))))))..(((((((......)))))))....... ( -26.30)
>DroSim_CAF1 9401 103 + 1
AAUAAAAGCGGAAUAGAAUGAAGUUG---UGA----------AGAUUUCAAAUAACUUCCACGGCGUUUUUUAUUCCAG----UACCGCUUGCUGGAAGUUAACCCACUUCCACUUUCCA
....((((.((((......(((((((---(..----------.........))))))))...((.(((.....((((((----((.....))))))))...)))))..)))).))))... ( -26.80)
>DroEre_CAF1 9797 112 + 1
AACAAAAGUCGAAUA-AAUGAAGAUA---UGAGGACUACCAAAAAUUUCAACCAACUUCCAGGGCACCUUUUAUUCCAG----ACCCGCCUGUUGGAAGUUAACCCACGUCCACUUUCCA
....(((((.((...-..(((((...---...((....)).....)))))...((((((((((((..............----....))))..))))))))........)).)))))... ( -18.57)
>DroYak_CAF1 9375 119 + 1
AACAAAAUUCGAAUA-AAUGAAGAUAUUAUGAUGACAACUAAAGUUUUUAAAUAACUUCCAGGGCGCUCUUUAUUCCAGCUUUAACUUCCAGUUGGAAGUUAGCCCGCUUACACUUUCCA
..........(((..-...((((.((((.(((.(((.......))).))))))).))))..(((((((.........)))..((((((((....)))))))))))).........))).. ( -25.00)
>consensus
AACAAAAGCGGAAUAGAAUGAAGAUG___UGA__________AGAUUUCAAAUAACUUCCACGGCGCUUUUUAUUCCAG____UACCGCUUGCUGGAAGUUAACCCACUUCCACUUUCCA
....((((.((((.....(((((((..................)))))))..(((((((((.((((....................))))...)))))))))......)))).))))... (-15.20 = -16.36 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006