| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,478,726 – 18,478,818 |
| Length | 92 |
| Max. P | 0.777676 |
| Location | 18,478,726 – 18,478,818 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.37 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -6.32 |
| Energy contribution | -7.28 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18478726 92 + 20766785 -----------CAAAUCCAUCGGUUGUGGUACUGGUGCUGUAAAUGC---AGCUGCAGCUGCGUUUGGGUU-UUAGCUAACU-CGACGCUCCAUUUGAGGUUUUAUUU -----------.(((.((.((((..((((..(((..(((((....))---)))..)))..(((((.(((((-......))))-)))))).)))))))))).))).... ( -25.40) >DroSec_CAF1 35769 86 + 1 -----------CAAACCCAUCGGUUGUG-----UGUGCUGUUAAUGC---AGCUGCAGCUGCGUUUG-GUU-UUGGCUAACU-CGACGCUCCAUUUGAGGUUUUAUUU -----------.(((((((..((((((.-----...(((((....))---))).))))))(((((.(-(((-......))))-.)))))......)).)))))..... ( -26.20) >DroSim_CAF1 36068 86 + 1 -----------CAAACCCAUCGGUUGUU-----GGUGCUGUUAAUGC---AGCUGCAGCUGCGUUUG-GUU-UUGGCUAACU-CGACGCUCCAUUUGAGGUUUUAUUU -----------.(((((((..((((((.-----...(((((....))---))).))))))(((((.(-(((-......))))-.)))))......)).)))))..... ( -26.90) >DroEre_CAF1 35884 86 + 1 -----------GAAACCUAUCCGGUGUU-----GUUGCUAUUAAAGC---AGCUGAAACUGCAUUUG-GUU-UUGGCUUACU-CGACGCGCCAUUUGAGGUUUUAUUU -----------(((((((....(((((.-----((((((.....)))---(((..(((((......)-)))-)..)))....-.)))))))).....))))))).... ( -27.50) >DroAna_CAF1 33481 99 + 1 UUGUUUCUCCGCAACUCCUG---CUGUU-----GCAGCUGUUUCUGCCCAAAAUGCAACUGCACUCG-GUUUUUGGUUUAUUCCGCUGCUCUAUUUGAGGUUUUAUUU .....((((.(((.....))---)....-----(((((.(..(..(((.(((((((....)))....-.)))).)))..)..).))))).......))))........ ( -18.70) >consensus ___________CAAACCCAUCGGUUGUU_____GGUGCUGUUAAUGC___AGCUGCAGCUGCGUUUG_GUU_UUGGCUAACU_CGACGCUCCAUUUGAGGUUUUAUUU ............(((((...................(((((.............))))).(((((...(((.......)))...))))).........)))))..... ( -6.32 = -7.28 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:35 2006