Locus 5831

Sequence ID 2R_DroMel_CAF1
Location 18,471,637 – 18,471,727
Length 90
Max. P 0.891927
window9340

overview

Window 0

Location 18,471,637 – 18,471,727
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.68
Mean single sequence MFE -26.80
Consensus MFE -23.22
Energy contribution -22.90
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.87
SVM decision value 0.97
SVM RNA-class probability 0.891927
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18471637 90 - 20766785
UACUAG-AGAUUCCGCAAAUAUAAAGCAAUUUUGUGAGCCAGCUCGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
....((-.((((..((((((((...(((....)))..((((......)))).))))))))(((((......))))))))).))((....)) ( -24.40)
>DroSec_CAF1 28725 90 - 1
UACUAG-AGAUUCCGCAAAUAUAAAGCAAUUUUGUGAGCCAGCUCGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
....((-.((((..((((((((...(((....)))..((((......)))).))))))))(((((......))))))))).))((....)) ( -24.40)
>DroSim_CAF1 28971 90 - 1
UACUAG-AGAUUCCGCAAAUAUAAAGCAAUUUUGUGAGCCAGCUCGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
....((-.((((..((((((((...(((....)))..((((......)))).))))))))(((((......))))))))).))((....)) ( -24.40)
>DroEre_CAF1 28759 91 - 1
UACUAGGGGAUUCCGCAAAUAUAAAGCAAUUUUGUGAGCUGGCUGGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
..((((((((((..((((((((..(((..........))).(((....))).))))))))(((((......)))))))))))))))..... ( -33.00)
>DroYak_CAF1 29498 90 - 1
UACUAC-GGAUUCCGCAAAUAUAAAGCAAUUUUGUUAGCCAGCUCGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
......-(((((..((((((((..((((....)))).((((......)))).))))))))(((((......))))))))))..((....)) ( -27.80)
>consensus
UACUAG_AGAUUCCGCAAAUAUAAAGCAAUUUUGUGAGCCAGCUCGGUGGCAGUGUUUGCGAGGAAAUCCCUCCUCGAUCCCUUGGCAACA
........((((..((((((((...(((....)))..((((......)))).))))))))(((((......)))))))))...((....)) (-23.22 = -22.90 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:32 2006