Locus 5830

Sequence ID	2R_DroMel_CAF1
Location	18,466,342 – 18,466,443
Length	101
Max. P	0.500000

overview

Window 9

Location	18,466,342 – 18,466,443
Length	101
Sequences	3
Columns	101
Reading direction	forward
Mean pairwise identity	96.68
Mean single sequence MFE	-20.93
Consensus MFE	-18.90
Energy contribution	-18.90
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.68
Structure conservation index	0.90
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18466342 101 + 20766785
UCAUAAUUCAAUUUUGAGUUGGUUUUCCGCUCAACUUUUUGUGGCCAGUCAACUCGGUGUUGUUGCCCUAAAUACAUAUAAAUAUAUAUAUAUGUAACAUG
........((((.((((((((..(..((((..........))))..)..)))))))).))))..........((((((((........))))))))..... ( -23.60)
>DroSec_CAF1 28476 99 + 1
UCAUAAUUCAAUUUUGAGUUGGUUUUCCGCUCAACUUUUUGUGGCCAGUCAACUCGGUGUUGUUGCCCUAAAUACAUAUAAAUAUAUAUAGUUGUAACU--
.........(((.((((((((..(..((((..........))))..)..)))))))).)))(((((.(((.(((.((....)).))).)))..))))).-- ( -19.60)
>DroSim_CAF1 28722 99 + 1
UCAUAAUUCAAUUUUGAGUUGGUUUUCCGCUCAACUUUUUGUGGCCAGUCAACUCGGUGUUGUUGCCCUAAAUACAUAUAAAUAUAUAUAGUUGUAACU--
.........(((.((((((((..(..((((..........))))..)..)))))))).)))(((((.(((.(((.((....)).))).)))..))))).-- ( -19.60)
>consensus
UCAUAAUUCAAUUUUGAGUUGGUUUUCCGCUCAACUUUUUGUGGCCAGUCAACUCGGUGUUGUUGCCCUAAAUACAUAUAAAUAUAUAUAGUUGUAACU__
........((((.((((((((..(..((((..........))))..)..)))))))).))))..........((((((((......))))..))))..... (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:31 2006