Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,982,135 – 2,982,244 |
Length | 109 |
Max. P | 0.704669 |
Location | 2,982,135 – 2,982,244 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -20.30 |
Energy contribution | -20.97 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.91 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2982135 109 + 20766785 AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAGACCACAGAGCACAGAGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU ...(((...((((((.((((..((((..............((.....))........(((......))).)))).(((((.....))))))))).))))))..)))... ( -23.40) >DroSec_CAF1 6778 95 + 1 AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG--------------AGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU ...(((...((((((.((((..((((......--------------.((.....)).(((......))).)))).(((((.....))))))))).))))))..)))... ( -23.40) >DroSim_CAF1 6753 88 + 1 AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG--------------A-------GCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU ...(((...((((((.((((............--------------.-------...(((......)))......(((((.....))))))))).))))))..)))... ( -20.20) >consensus AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG______________AGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU ...(((...((((((.((((..((((.....................((.....)).(((......))).)))).(((((.....))))))))).))))))..)))... (-20.30 = -20.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006