Locus 5827

Sequence ID 2R_DroMel_CAF1
Location 18,463,556 – 18,463,653
Length 97
Max. P 0.990601
window9333

overview

Window 3

Location 18,463,556 – 18,463,653
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 93.13
Mean single sequence MFE -37.52
Consensus MFE -33.43
Energy contribution -34.48
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.27
Structure conservation index 0.89
SVM decision value 2.22
SVM RNA-class probability 0.990601
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18463556 97 - 20766785
AUUCGUGGUGGUCGUGUGUUUAGUUUUCGGCCACGUGCCUCGCAUAAUAAUAAGCGGCAUUCGAGCCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
.......(((((((.............))))))).......((((.......((((((......))))))((((((((....)))))))).)))).. ( -37.42)
>DroSec_CAF1 25558 97 - 1
AUUCGUGGUGGUCGUGUGUUCUGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUUCGAGCCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
....((((.(((((((.(((........))))))).))))))).........((((((......))))))((((((((....))))))))....... ( -39.20)
>DroSim_CAF1 25799 97 - 1
AUUCGUGGUGGUCGUGUGUUUAGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUUCGAGCCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
....((((.(((((((.(((........))))))).))))))).........((((((......))))))((((((((....))))))))....... ( -39.20)
>DroEre_CAF1 25603 97 - 1
AUUCGUGGUGGUCGUGUGUUUAGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUUCGAGCCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
....((((.(((((((.(((........))))))).))))))).........((((((......))))))((((((((....))))))))....... ( -39.20)
>DroYak_CAF1 26448 97 - 1
AUUCGUGGUGGUCGUGUGUUUAGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUUCGAGGCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
..(((..(((((((.............)))))))(((((..((..........))))))).)))((((.(((((((((....))))))))).)))). ( -37.62)
>DroAna_CAF1 23438 91 - 1
AUUCGUGGCGGUCGUGUGUUUAGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUCCGAGCCGUGGCCGCUGCAGUGG------CGUCUCCA
....((((.(((((((.(((........))))))).)))))))..........(((((......))))).(((((....))))------)....... ( -32.50)
>consensus
AUUCGUGGUGGUCGUGUGUUUAGUUUUCGGCCACGUGCCCCGCAUAAUAAUAAGCGGCAUUCGAGCCGCUGCAGUUGCAGUUGUAGCUGCGAUGCCA
....((((.(((((((.(((........))))))).))))))).........((((((......))))))((((((((....))))))))....... (-33.43 = -34.48 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:25 2006