Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,457,710 – 18,457,800 |
Length | 90 |
Max. P | 0.517055 |
Location | 18,457,710 – 18,457,800 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -17.95 |
Energy contribution | -20.77 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.61 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18457710 90 + 20766785 UCAGUAUUGGCAUUGGUGUGGGUAGCAGUAACGGUAACGUUACACCGCUCCCGGUGACGUCAGCAUGUUGUUGCAUAGUUAAUUGGUGCC ........(((((..((....((((((((((((....))))))...(((..((....))..)))....)))))).......))..))))) ( -33.00) >DroSec_CAF1 20123 90 + 1 UCAGUAUGGGCAUUGGUGUGGGUAGCAGUAACGGUAACGUUACACCGCUCCCGGUGACGUCAGCAUGUUGUUGCAUAGUUAAUUGGUGCC ........(((((..((....((((((((((((....))))))...(((..((....))..)))....)))))).......))..))))) ( -33.00) >DroSim_CAF1 20003 90 + 1 UCAGUAUGGGCAUUGGUGUGGGUAGCAGUAACGGUAAAGUUACACCGCUCCCGGUGACGUCAGCAUGUUGUUGCAUAGUUAAUUGGUGCC ........(((((..((....(((((((((((......)))))...(((..((....))..)))....)))))).......))..))))) ( -30.60) >DroEre_CAF1 19668 73 + 1 UCAGUAUAU-----------------CGCAUCGGUAACGUUACACCGCUCCCGGUGACGUCAGCAUGUUGUUGCAUAGUUAAUUGGUGCC .........-----------------.(((((((((((........(((..((....))..)))((((....)))).))).)))))))). ( -20.90) >consensus UCAGUAUGGGCAUUGGUGUGGGUAGCAGUAACGGUAACGUUACACCGCUCCCGGUGACGUCAGCAUGUUGUUGCAUAGUUAAUUGGUGCC ........(((((..((.......(((((((((((.((((..(((((....)))))))))..)).))))))))).......))..))))) (-17.95 = -20.77 + 2.81)
Location | 18,457,710 – 18,457,800 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -15.20 |
Energy contribution | -16.45 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18457710 90 - 20766785 GGCACCAAUUAACUAUGCAACAACAUGCUGACGUCACCGGGAGCGGUGUAACGUUACCGUUACUGCUACCCACACCAAUGCCAAUACUGA ((((............(((......)))..........((((((((((..(((....)))))))))).))).......))))........ ( -23.40) >DroSec_CAF1 20123 90 - 1 GGCACCAAUUAACUAUGCAACAACAUGCUGACGUCACCGGGAGCGGUGUAACGUUACCGUUACUGCUACCCACACCAAUGCCCAUACUGA ((((............(((......)))..........((((((((((..(((....)))))))))).))).......))))........ ( -22.50) >DroSim_CAF1 20003 90 - 1 GGCACCAAUUAACUAUGCAACAACAUGCUGACGUCACCGGGAGCGGUGUAACUUUACCGUUACUGCUACCCACACCAAUGCCCAUACUGA ((((............(((......)))..........((((((((((............))))))).))).......))))........ ( -20.70) >DroEre_CAF1 19668 73 - 1 GGCACCAAUUAACUAUGCAACAACAUGCUGACGUCACCGGGAGCGGUGUAACGUUACCGAUGCG-----------------AUAUACUGA .(((.(..........(((......)))(((((((((((....)))))..))))))..).))).-----------------......... ( -18.30) >consensus GGCACCAAUUAACUAUGCAACAACAUGCUGACGUCACCGGGAGCGGUGUAACGUUACCGUUACUGCUACCCACACCAAUGCCCAUACUGA ((((............(((......)))(((((((((((....)))))..))))))......................))))........ (-15.20 = -16.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:21 2006