Locus 5821

Sequence ID 2R_DroMel_CAF1
Location 18,454,297 – 18,454,390
Length 93
Max. P 0.985924
window9323

overview

Window 3

Location 18,454,297 – 18,454,390
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 75.14
Mean single sequence MFE -32.02
Consensus MFE -23.59
Energy contribution -25.98
Covariance contribution 2.39
Combinations/Pair 1.12
Mean z-score -2.13
Structure conservation index 0.74
SVM decision value 2.02
SVM RNA-class probability 0.985924
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18454297 93 + 20766785
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCGCAUCCAUGUCAUGGCGUCGUGAUGCAGCGGCGCCA---CCAGGAGCUCUGCCUCUGCUCCA--
...(((((....(((((((.....))))))).))))).........(((((((((......)))))))))---...(((((.........))))).-- ( -39.20)
>DroVir_CAF1 15731 81 + 1
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCACAUGGUCCACAUGGCAAU----------GGAC-UACGACCAGGCCCGC------UGUUGCACA
(((.((((..(..((((((.....))))))(((((((((.....))))....)----------))))-........)..))))------.)))..... ( -25.10)
>DroSec_CAF1 16706 93 + 1
AAUUGCGGUUCGUUAGCUACAUUUCAGCUAGUCCGCAUCCAUGUCAGGGCGUCGUGAUGCAGCGGCGCCA---CCAGGAGCUCUGCCUCUGCUCCA--
...(((((....((((((.......)))))).)))))..........((((((((......)))))))).---...(((((.........))))).-- ( -35.90)
>DroEre_CAF1 16130 93 + 1
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCGCAUCCAUGUCAGGGCGUUGUGAUGCAGCGGCGCCA---CCAGGAGCUCUGCCUCUGCUCCA--
...(((((....(((((((.....))))))).)))))..........((((((((......)))))))).---...(((((.........))))).-- ( -36.50)
>DroYak_CAF1 16828 93 + 1
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCGCAUCCAUGUCAGGGCGUUGUGAUGCAACGGCGCCA---CCAGGAGCUCUGCCACUGCUCCA--
...(((((....(((((((.....))))))).)))))..........((((((((......)))))))).---...(((((.........))))).-- ( -36.80)
>DroMoj_CAF1 22228 80 + 1
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCACAUGGUCCACACGGCAAU----------GGAGCCAC--ACAGACACAC------UUACACAUA
...((.(((((.(((((((.....)))))))....(((.(((.....))).))----------)))))).)--).........------......... ( -18.60)
>consensus
AAUUGCGGUUCGUUAGCUGCAUUUCAGCUAGUCCGCAUCCAUGUCAGGGCGUUGUGAUGCAGCGGCGCCA___CCAGGAGCUCUGCCUCUGCUCCA__
...(((((....(((((((.....))))))).)))))..........((((((((......)))))))).......(((((.........)))))... (-23.59 = -25.98 +   2.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:16 2006