Locus 582

Sequence ID 2R_DroMel_CAF1
Location 2,980,256 – 2,980,358
Length 102
Max. P 0.954873
window1060

overview

Window 0

Location 2,980,256 – 2,980,358
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.80
Mean single sequence MFE -30.90
Consensus MFE -18.77
Energy contribution -20.47
Covariance contribution 1.70
Combinations/Pair 1.31
Mean z-score -2.02
Structure conservation index 0.61
SVM decision value 1.45
SVM RNA-class probability 0.954873
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2980256 102 + 20766785
GUUGCUGGAGAAUCCGCCGCUGGUGGUGCUCCGCCUGAACUCCUUAACUAGCUUAUUCGAGUUGGAGAACACGUAAAUUACAAGCGGCUUUUCUCUAUUUA--C----------------
.....(((((((...(((((((((((....)))))............(((((((....))))))).................))))))..)))))))....--.---------------- ( -32.80)
>DroVir_CAF1 4823 107 + 1
GUUGCUGCAGAAUCCGCCGCUUGUUGUAUUAUUCUUGAACUCUUUGAUCAAUUUACUAGAGUUCGAGAACACGUAGAGUACAAGUGGUUUUUCUCUAUUUU----------AAGCGG---
....((((((((...((((((((((.(((..((((((((((((.(((.....)))..))))))))))))...))).)..)))))))))..)))).......----------..))))--- ( -32.00)
>DroPse_CAF1 4830 115 + 1
GUUGCUGCAGAAUCCGCCGCUUGUGGUAUUGCUCUUGAACUCUUUAACUAGCUUGUUUGAGUUUGAGAACACGUAAAUUACAAGAGGUUUCUCUCUAAUUA--CGGGGAGUA---AGGAA
............((((((.((((((((.(((((((..(((((...(((......))).)))))..)))....)))))))))))).)))..((((((.....--.))))))..---.))). ( -35.50)
>DroGri_CAF1 4829 117 + 1
GUUGCUGCAGAAUCCGCCGCUUGAUGUGUUUUUCUUGAAUUCAUUAACUAGCUUUUUAGAGUUUGAGAACACGUAGAGUACAAGUGGUUUUUCCCUAUUUUGUUGGGUAGUAGUUGG---
...(((((.(((...((((((((((((((...(((..(((((................)))))..)))))))))......))))))))..)))((((......))))..)))))...--- ( -31.69)
>DroWil_CAF1 5294 99 + 1
GUUGCUGCUGAAUCCGCCGCUUGUUGUAUUAUUCUUGAACUCUUUAAUUAGCUUGCUCGAGUUUGAAAACACAUAAAUAACAAGUGGUUUUUCUCUGGU---------------------
...((((..(((...((((((((((((.((((..(..(((((................)))))..)......))))))))))))))))..)))..))))--------------------- ( -23.29)
>DroPer_CAF1 6890 115 + 1
GUUGCUGCAGAAUCCGCCGCUUGUGGUAUUGCUCUUGAACUCUUUAACUAGCUUGUUUGAGUUUGAAAACACGUAAAUUACAAGAGGUUUCUCUCUAAUUA--CGGGGAGUA---AGGAA
............((((((.((((((((.((((..(..(((((...(((......))).)))))..)......)))))))))))).)))..((((((.....--.))))))..---.))). ( -30.10)
>consensus
GUUGCUGCAGAAUCCGCCGCUUGUGGUAUUACUCUUGAACUCUUUAACUAGCUUGUUAGAGUUUGAGAACACGUAAAUUACAAGUGGUUUUUCUCUAUUUA__C_______A____G___
.........(((...((((((((((((.((((((((((((((................))))))))))....))))))))))))))))..)))........................... (-18.77 = -20.47 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:07 2006