Locus 5819

Sequence ID 2R_DroMel_CAF1
Location 18,431,895 – 18,431,995
Length 100
Max. P 0.520260
window9320

overview

Window 0

Location 18,431,895 – 18,431,995
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.02
Mean single sequence MFE -31.20
Consensus MFE -18.85
Energy contribution -20.30
Covariance contribution 1.45
Combinations/Pair 1.29
Mean z-score -1.46
Structure conservation index 0.60
SVM decision value -0.03
SVM RNA-class probability 0.520260
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18431895 100 - 20766785
AUAUAUAA-----AUUUAUCCUGGCACUCCUUGCAGUGAUUAUUGUAAAGGAUUUGGUCAAUGCGAAGAGCACAGCCCAACAGCCGCAGGCGCGUCUGGUGCCAC
........-----........((((((((((((((((....))))).))))).((((.(..(((.....)))..).))))(((.(((....))).))))))))). ( -30.40)
>DroVir_CAF1 7130 104 - 1
UCAUACUAAGCUUAUUUAUCCUAUGUGU-UUGUUAGUUAUAAUCAUCAAAGAUGUAGCCGCUGCCAAGACGUGCGGCAAGCAGCCGCUCGCACGGCUCGUGCCGC
......................((((.(-(((.((((......((((...)))).....)))).))))))))((((((.(.(((((......)))))).)))))) ( -26.80)
>DroSec_CAF1 6013 100 - 1
AUAUAUAG-----AUUUAACCUGGUUCUCCUUGCAGUGAUCAUUGUAAAGGAUUUGGUCAAUGCGAAGAGCACAGGCCAACAGCCGCAGGCGCGUCUGGUGACAC
........-----......(((((((((..(((((.((((((............)))))).)))))))))).)))).((.(((.(((....))).))).)).... ( -30.00)
>DroSim_CAF1 5357 100 - 1
AUAUAUAG-----AUUUAACCUGGUUCUCCUUGCAGUGAUCAUUGUAAAGGAUUUGGUCAAUGCAAAGAGCACAGGCCAACAGCCGCAGGCGCGUCUGGUGACAC
........-----......(((((((((..(((((.((((((............)))))).)))))))))).)))).((.(((.(((....))).))).)).... ( -30.30)
>DroEre_CAF1 5145 100 - 1
AUAUGUAU-----AUGUAACCUGGCUCUCCUUGCAGUGAUCAUUGUGAAGGAUUUGGCCAAUGCGAAGAUCACAGGCGAACAGCCGCAGGCGCGGCUGGUGUCAC
........-----.((((...(((((.((((((((((....))))).)))))...))))).)))).........((((..(((((((....))))))).)))).. ( -33.70)
>DroYak_CAF1 5178 100 - 1
AUAUGUAU-----AUCUAACCUGGCUCUCCUUGCAGUGAUCAUUGUGAAGGAUUUGGCCAAUGCGAAAAGCACAGGCCAACAGCCGCAGGCGCGUCUUGUGCCGC
........-----.........((((.((((((((((....))))).))))).((((((..(((.....)))..)))))).))))((.(((((.....))))))) ( -36.00)
>consensus
AUAUAUAA_____AUUUAACCUGGCUCUCCUUGCAGUGAUCAUUGUAAAGGAUUUGGCCAAUGCGAAGAGCACAGGCCAACAGCCGCAGGCGCGUCUGGUGCCAC
......................((((.((((((((((....)))))).)))).((((((..(((.....)))..)))))).))))...(((((.....))))).. (-18.85 = -20.30 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:13 2006