| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,427,597 – 18,427,693 |
| Length | 96 |
| Max. P | 0.965665 |
| Location | 18,427,597 – 18,427,693 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -38.46 |
| Consensus MFE | -26.79 |
| Energy contribution | -27.12 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18427597 96 - 20766785 GAGACCAGCGUUUUCGGAGGAGCU------ACAACUGCUCCUUCAAACACCACGGCUGCGGCAACACCAG------------AUGCACCACCAGCGGGUCUCUUUGCAUCGGCC ((((((.((((((..((((((((.------......)))))))))))).....((.((..(((.(....)------------.)))..)))).)).))))))............ ( -35.50) >DroSec_CAF1 1502 96 - 1 GAGACCAGCGUUUUCGGAGGGGUU------GCAACUGCUCCUUCAAACACCACGGCUGCGGCAACACCAG------------CUGCACCACCAGUGGGUCUCUUUGCAUCGGCC ((((((.((((((..((((((((.------......)))))))))))).....((.((((((.......)------------)))))))....)).))))))............ ( -35.90) >DroSim_CAF1 840 96 - 1 GAGACCAGUGUUUUCGGAGGGGUU------GCAACUGCUCCUUCAAACACCACGGCUGCGGCAACACCAG------------CUGCACCACCAGUGGGUCUCUUUGCAUCGGCC ((((((.((((((..((((((((.------......))))))))))))))(((((.((((((.......)------------)))))...)).)))))))))............ ( -38.30) >DroEre_CAF1 843 108 - 1 GAUGACACAGUUUUCGGAGGAGCU------ACUACUGCUUCUCCGAACACCACGGCUGCGGCAACACCAGCUACAACACCUGCUGCACCACCAGCGGGUCUCUUUGCGUCGGCC ..((((.((((.(((((((((((.------......))))))))))).))...(((((.(....)..))))).....((((((((......)))))))).....)).))))... ( -43.10) >DroYak_CAF1 843 114 - 1 GAUACCAGCGUUUUUGGAGGCGCUACUGCUACUACUGCUCCUUCGAAUACCACUGCUGCGGCAACACCAGCUGCUACAGCAGCUGCACCACCAGCAGGUCUCUUUGCGUCGGCC ....((.((((....((((((((....)).......................((((((.(....)..(((((((....)))))))......))))))))))))..)))).)).. ( -39.50) >consensus GAGACCAGCGUUUUCGGAGGAGCU______ACAACUGCUCCUUCAAACACCACGGCUGCGGCAACACCAG____________CUGCACCACCAGCGGGUCUCUUUGCAUCGGCC ((((((...((((..((((((((.............))))))))))))......((((.(....)..((((((......))))))......)))).))))))...((....)). (-26.79 = -27.12 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:10 2006