| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,421,759 – 18,421,864 |
| Length | 105 |
| Max. P | 0.582205 |
| Location | 18,421,759 – 18,421,864 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.91 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -23.19 |
| Energy contribution | -24.58 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18421759 105 - 20766785 UCCCAGGACGAUGUACAAACGUGUCUCGGAAAGAUCGAAGAAGGAGAGCAGUGUCUCCUUGGCAUUGGGCUCGGAAGAGCUCUUGUCUACAA------GAGAAAAAAAAAA--- ..((..(((.((((....)))))))..)).....((....(((((((......)))))))((((..((((((....)))))).)))).....------))...........--- ( -33.90) >DroVir_CAF1 19045 114 - 1 ACCUAGGACAAUAUACAAACGUGUCUCGGACAGAUCGAAGAAGGAGAGUAGCGUAUCCUUGGCACUCGUAUCCACGGCACUCUUGUCUGUGGGCACACAAAAACCAAAGCUGUU ..(..(((((...........)))))..)((((............((((.((.........))))))((..((((((.((....))))))))..)).............)))). ( -26.70) >DroSec_CAF1 9742 105 - 1 UCCCAGGACGAUGUACAAACGUGUCUCGGAAAGAUCGAAGAAGGAGAGCAGAGUCUCCUUGUCAUUGGGCUCCGAGGAGCUCUUGUCUACAC------GAGAAACACAGUA--- ....................((((((((...((((.((..(((((((......))))))).))...((((((....))))))..))))...)------))))..)))....--- ( -31.90) >DroSim_CAF1 9752 105 - 1 UCCCAGGACGAUGUACAAACGUGUCUCGGAAAGAUCGAAGAAGGAGAGCAGAGUCUCCUUGGCAUUGGGCUCGGAGGAGCUCUUGUCUACAC------GAGAAACAUAAUA--- ..((..(((.((((....)))))))..)).....(((...(((((((......)))))))((((..((((((....)))))).))))....)------))...........--- ( -32.40) >DroEre_CAF1 10238 105 - 1 UCCCAGGACGAUGUACAAACGUGUCUCCGACAGGUCAAAAAAGGAGAGCAGUGUCUCCUUGGCAUCGGGCUCGGAGGAGCUCUUGUCUACAC------GAAGAAAAAAUUC--- .....(((((((((....((.((((...)))).)).....(((((((......))))))).)))))((((((....))))))..))))....------.............--- ( -32.00) >DroYak_CAF1 10208 105 - 1 UCCCAGGACAAUGUACAAACGUGUCUCGGAGAGAUCGAAGAAGGAGAGCAGUGUCUCCUUGGCAUUGGGCUCUGACGCGCUCUUGUCUACAC------GAAGAAUAAAAUA--- ((((..((((.(((....)))))))..)).))..(((.(((..((((((.(((((.(((.......)))....))))))))))).)))...)------))...........--- ( -29.70) >consensus UCCCAGGACGAUGUACAAACGUGUCUCGGAAAGAUCGAAGAAGGAGAGCAGUGUCUCCUUGGCAUUGGGCUCGGAGGAGCUCUUGUCUACAC______GAAAAACAAAAUA___ ..((.((((.((((....)))))))).))...........(((((((......)))))))((((..((((((....)))))).))))........................... (-23.19 = -24.58 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:09 2006