Locus 5814

Sequence ID 2R_DroMel_CAF1
Location 18,413,448 – 18,413,545
Length 97
Max. P 0.661936
window9312

overview

Window 2

Location 18,413,448 – 18,413,545
Length 97
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.33
Mean single sequence MFE -20.97
Consensus MFE -11.25
Energy contribution -11.00
Covariance contribution -0.25
Combinations/Pair 1.28
Mean z-score -1.88
Structure conservation index 0.54
SVM decision value 0.27
SVM RNA-class probability 0.661936
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18413448 97 + 20766785
----------GAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUGGAUAUGUCCAUAAAGUAUGGCUCACACACUCGAAUAAUGUGCAUACAUUGUGUAGU
----------..(((((((.(((((((....)))).............(((((....))))).......))).)))..........(((((....)))))))))... ( -22.50)
>DroPse_CAF1 1361 87 + 1
----------UAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUCGAUAUGUCUAUAAAGCAGG---UACAUAU-------CUGUACAUACGUACGGUACG
----------........(((((((((....))))................(((((((((........))---.))))))-------).((((....))))))))). ( -20.60)
>DroSec_CAF1 1523 97 + 1
----------GAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUGGAUAUGUCCAUAAAGUAUGGCUCACACACUCGAAUAAUGUGCAUACAUUCUGUACU
----------......(((.(((((((....)))).............(((((....))))).......))).))).............(((((.......))))). ( -20.50)
>DroEre_CAF1 1643 97 + 1
----------GAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUGGUUAUGCCCAUAAAGUAUGGCUCACACACUCCAAUAAUGUGCAUACAUUGUGCACU
----------......(((.(((((((....)))).............((((......)))).......))).))).............((((((.....)))))). ( -22.60)
>DroAna_CAF1 1149 99 + 1
CAACUGGUCGGAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUGGAUAUGUCUAUAAAGUAUCGCACACACAUUCGCAUUAUGUAC--------UGUACU
.....((((((.....((((((.((((....))))................(((((.........)))))))))))((((.......)))).)--------)).))) ( -19.00)
>DroPer_CAF1 1331 87 + 1
----------UAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUCGAUAUGUCUAUAAAGCAGG---UACAUAU-------CUGUACAUACGUACGGUACG
----------........(((((((((....))))................(((((((((........))---.))))))-------).((((....))))))))). ( -20.60)
>consensus
__________GAACACGUGUGCCGCAUCAAAAUGCCAAAUCAAUUUCCAUGGAUAUGUCCAUAAAGUAUGGCUCACACACUCGAAUAAUGUACAUACAUUCUGUACU
................(((((..((((....)))).............(((((....)))))...........)))))...........((((.........)))). (-11.25 = -11.00 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:05 2006