Locus 5812

Sequence ID 2R_DroMel_CAF1
Location 18,409,028 – 18,409,135
Length 107
Max. P 0.990621
window9307

overview

Window 7

Location 18,409,028 – 18,409,135
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 96.92
Mean single sequence MFE -23.56
Consensus MFE -21.04
Energy contribution -21.56
Covariance contribution 0.52
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.89
SVM decision value 2.22
SVM RNA-class probability 0.990621
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18409028 107 + 20766785
CCUCCCUCGGCCGUUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUAGCCAUUUUGUACUUAUCCAGCCGAA
........(((((((..((((((....)))))).)))))))...(((((......(((...(((..(.((((.........)))))..)))...)))....))))). ( -25.10)
>DroSec_CAF1 12024 107 + 1
GCUCCCUCGGCUGUUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUAGCCAUUUUGUACUUAUCCAGCCGAA
......(((((((((((((((..((......(((...))).......)).))))))))..........((((.........))))..............))))))). ( -25.82)
>DroSim_CAF1 12119 107 + 1
CCUUCCUCGGCCGUUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUGGCCAUUUUGUACUUAUCCAGCCGAA
........(((((((..((((((....)))))).)))))))...(((((......(((...(((..(.(((.(........)))))..)))...)))....))))). ( -25.30)
>DroEre_CAF1 12058 107 + 1
CCUCCCUCGGCAGCUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUAUCCAUUUUGUACUUAUCCAGCCGAA
......(((((((((..((((((....))))))....((((.....))))..................))))....(((...........)))........))))). ( -19.10)
>DroYak_CAF1 12259 107 + 1
CCUCCCUCGGCCGCUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUAGCCAUUUUGUACUUAUCCCGCCGAA
........(((((....((((((....))))))...)))))...(((((......(((...(((..(.((((.........)))))..)))...)))....))))). ( -22.50)
>consensus
CCUCCCUCGGCCGUUAAGUGGUUACACAAUCGCCAAUGGCCAACUCGGUCCCAUUUAAAAUCAAUUUCGGCUCUUUUACUUAGCCAUUUUGUACUUAUCCAGCCGAA
........(((((((..((((((....)))))).)))))))...(((((......(((...(((..(.((((.........)))))..)))...)))....))))). (-21.04 = -21.56 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006