| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,407,653 – 18,407,745 |
| Length | 92 |
| Max. P | 0.873390 |
| Location | 18,407,653 – 18,407,745 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -19.77 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18407653 92 + 20766785 CUUUGGAUGGCUCUCGCCAGUUUAGAGAUCAAGUUUAAUGGCCAUAAA---GCGACAGCAAAUAAGCGCUUGU-UGUUUGUUUGUUCGCUUGUUGG (((((((((((....)))).)))))))..............(((..((---((((..(((((((((((.....-)))))))))))))))))..))) ( -29.20) >DroSec_CAF1 10671 92 + 1 CUUUGGAUGGCUCUCGCCAGUUUAGAGAUCAAGUUUAAUGGCCAUAAA---GCGACAGCAAAUAAACGCUUGU-UGUUUGUUUGUUCGCUUGUUGG (((((((((((....)))).)))))))..............(((..((---((((..(((((((((((.....-)))))))))))))))))..))) ( -29.20) >DroSim_CAF1 10729 92 + 1 CUUUGGAUGGCUCUCGCCAGUUUAGAGAUCAAGUUUAAUGGCCAUAAA---GCGACAGCAAAUAAACGCUUGU-UGUUUGUUUGUUCGCUUGUUGG (((((((((((....)))).)))))))..............(((..((---((((..(((((((((((.....-)))))))))))))))))..))) ( -29.20) >DroEre_CAF1 10541 92 + 1 CUUUGAAUGGCUCUCGCCAGUUUAGAGAUCAAGUUUAAUGGCCAUAAA---GCGACAGCAAAUAAACGCUUGU-UGUUUGUUUGUUCGCUUGUUGG (((((((((((....)))).)))))))..............(((..((---((((..(((((((((((.....-)))))))))))))))))..))) ( -29.60) >DroAna_CAF1 13418 89 + 1 CUUUGGAUG-------CCAGCUUAGAGAUCAAGUUUAACAAGCAUAAAACAGCGACAGCAAAUAAACGCUUGUUUAUUUAUCUGUCUGUCUGUUUG ...(((...-------)))((((..((((...))))...))))...((((((((((((.((((((((....))))))))..))))).).)))))). ( -19.40) >consensus CUUUGGAUGGCUCUCGCCAGUUUAGAGAUCAAGUUUAAUGGCCAUAAA___GCGACAGCAAAUAAACGCUUGU_UGUUUGUUUGUUCGCUUGUUGG (((((((((((....)))).)))))))........................((((..(((((((((((......)))))))))))))))....... (-19.77 = -20.02 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:59 2006