Locus 5810

Sequence ID 2R_DroMel_CAF1
Location 18,405,844 – 18,405,951
Length 107
Max. P 0.991984
window9305

overview

Window 5

Location 18,405,844 – 18,405,951
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 91.78
Mean single sequence MFE -37.34
Consensus MFE -31.90
Energy contribution -32.02
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.85
SVM decision value 2.30
SVM RNA-class probability 0.991984
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18405844 107 + 20766785
UCUGUGUGAGAUUGUGGCAGGCUACCCACACCACGCAGGUUCUCCCUGAGCCUCGUCGCCCAUACUAUUUUUGGGGGCAUUUAAAGCGUAUAUGCUGGCACUCGCAU
...(((((((...((((....))))(((((..((((((((((.....)))))).(((.((((.........))))))).......))))...)).)))..))))))) ( -35.80)
>DroSec_CAF1 8838 107 + 1
UCUGUGUGAGAUUGUGGCAGGCUACUCACACCACGCAGGUUCUCCCUGAGCCUCGUCCCCCAUACUAUUUUUGGGGGCAUUAAAAGCGUAUAUGCUGGCACUCGCAU
...(((((((..(((((((((.........))((((((((((.....)))))).(.((((((.........))))))).......))))...)))).)))))))))) ( -36.90)
>DroSim_CAF1 8931 107 + 1
UCUGUGUGAGAUUGUGGCAGGCUACCCACACCACGCAGGUUCUCCCUGAGCCUCGUCCCCCAUACUAUUUUUGGGGGCAUUAAAAGCGUAUAUGCUGGCACUUGGAU
((((((((.(..(((((........))))))))))))))...(((..(.(((..(.((((((.........)))))))......((((....))))))).)..))). ( -37.00)
>DroEre_CAF1 8734 107 + 1
UCGGUGUGAGAUUGUGGCAGGCUACCCACGCCACGCAGGUUCUCAAUGAGCCUCGUCCCCCAUAAUAUUUUGGGGGGCAUUAAAAGCGUAUUUACUGGCACUCGCAU
...(((((((...((((........))))(((((((((((((.....)))))).((((((((........)))))))).......)))).......))).))))))) ( -46.11)
>DroYak_CAF1 8917 106 + 1
UCGGUGUGAGAUUGUGGCAGGCUACCCACACCACGCAGGUUCUCAAUGAGCCUCGUCCCUCAUACUUUUUUGG-UGGCAUUAAGAGCGUAUUCACUGGCACUCGCAU
...(((((((..(((((........)))))..((((((((((.....)))))).(((((............))-.))).......))))...........))))))) ( -30.90)
>consensus
UCUGUGUGAGAUUGUGGCAGGCUACCCACACCACGCAGGUUCUCCCUGAGCCUCGUCCCCCAUACUAUUUUUGGGGGCAUUAAAAGCGUAUAUGCUGGCACUCGCAU
...((((.((..(((((........)))))..((((((((((.....)))))).((((((............)))))).......)))).....)).))))...... (-31.90 = -32.02 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:58 2006