Locus 5806

Sequence ID 2R_DroMel_CAF1
Location 18,385,538 – 18,385,630
Length 92
Max. P 0.984184
window9301

overview

Window 1

Location 18,385,538 – 18,385,630
Length 92
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 84.90
Mean single sequence MFE -34.25
Consensus MFE -29.30
Energy contribution -29.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.48
Structure conservation index 0.86
SVM decision value 1.97
SVM RNA-class probability 0.984184
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18385538 92 - 20766785
CCAG-----------------GAUGCCAAGGAUGCCAAGGAUGCCGAGGAUGCCAGGGAUGUGAGAUCAACUAACGUGAGAUUGAGAGGCAUGCUUUGGCGUCCGUUUC
...(-----------------(((((((((((((((..(.((.((..((...)).)).)).)..((((.((....))..))))....))))).)))))))))))..... ( -35.00)
>DroSim_CAF1 23449 83 - 1
CCAG-----------------GAUGC---------CAAGGAUGCCGAGGAUGCCAGGGAUGUGAGGUCAACUAACGUGAGAUUGAGAGGCAUGCUUUGGCGUCCGUUUC
...(-----------------(((((---------((((((((((.((...(((..........)))...))..(....).......))))).)))))))))))..... ( -31.70)
>DroEre_CAF1 22877 83 - 1
CCAG-----------------GAUGC---------CAAGGAUGCCGAGGAUGCCAGGGAUGUGAGGUCAACUAACGUGAGAUUGAGAGGCAUGCUUUGGCGUCCGUUUC
...(-----------------(((((---------((((((((((.((...(((..........)))...))..(....).......))))).)))))))))))..... ( -31.70)
>DroYak_CAF1 23032 100 - 1
CCAGGAGCGAAGGAUACCAAGGAUGC---------CAAGGAUGCCGAGGAUGCCGGGGUUGUGAGGUCAACUAACGUGAGAUUGAGAGGCAUGCUUUGGCGUCCGUUUC
...(((((...((...(....)...)---------)..((((((((((((((((..(((((......)))))..(....).......))))).)))))))))))))))) ( -38.60)
>consensus
CCAG_________________GAUGC_________CAAGGAUGCCGAGGAUGCCAGGGAUGUGAGGUCAACUAACGUGAGAUUGAGAGGCAUGCUUUGGCGUCCGUUUC
......................................((((((((((((((((..((.((......)).))..(....).......))))).)))))))))))..... (-29.30 = -29.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:54 2006