Locus 5801

Sequence ID 2R_DroMel_CAF1
Location 18,364,788 – 18,364,908
Length 120
Max. P 0.646735
window9293

overview

Window 3

Location 18,364,788 – 18,364,908
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -47.42
Consensus MFE -34.54
Energy contribution -33.85
Covariance contribution -0.69
Combinations/Pair 1.46
Mean z-score -1.70
Structure conservation index 0.73
SVM decision value 0.24
SVM RNA-class probability 0.646735
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18364788 120 - 20766785
ACUCGCUGGCCACAAGGACCGCCAGAAGAUGGCCUGCUUUGUUGCCGGUGUGGAUCCCAACGGAGCAUUGGGUAGCGUGGACAUCAAACCGGGCGACGAGAUCGUCGAGGUCAACGGCAA
....((((.((((....(((((((.....)))).((((((((((..((.......))))))))))))...)))...)))).......(((...(((((....))))).)))...)))).. ( -43.80)
>DroVir_CAF1 2118 120 - 1
UCUGGCCGGCCACAAGGAUAGACAGAAAAUGGCCUGCUUUGUGGCUGGCGUCGAUCCGAAUGGGCUGCUGGCCAGCGUGGAUGUGAAGCCGGGCGACGAGAUCGUCGAGGUCAAUGGCAA
....(((((((((((((.(((.((.....))..))))))))))))))))(((((((((..(((.(....).)))...))))).....(((...(((((....))))).)))...)))).. ( -53.10)
>DroGri_CAF1 3162 120 - 1
UCUUGCCGGCCACAAGGAUCGACAGAAGAUGGCCUGCUUUGUGGCCGGCGUCGAUCCCAAUGGGUUGCUGGCCGGUGUGGAUAUGAAACCGGGCGAUGAGAUUGUCGAACUCAAUGGCAA
....(((((((((((((.....((.....)).....))))))))))))).......(((.((((((...(.(((((...........))))).)(((......))).)))))).)))... ( -48.20)
>DroWil_CAF1 2712 120 - 1
CCUCGCUGGUCAUAAAGAUCGUCAGAAGAUGGCCUGUUUUGUGGCCGGUGUGGAUCCCAAUGGCCUGCUGGCCAGUGUCGAUGUGAAGCCCGGCGAUGAGAUAGUCGAAGUCAAUGGCAA
((.((((((((((((((...((((.....))))...)))))))))))))).)).......(((((....))))).(((((...(((....((((.........))))...))).))))). ( -44.80)
>DroMoj_CAF1 1805 120 - 1
UUUGGCUGGUCACAAGGAUAGACAGAAAAUGGCCUGCUUUGUCGCCGGCGUGGAUCCGAAUGGCUUGCUGGCCAAUCUGGAUGUGAAGCCGGGCGACGAGAUCGUCGAGGUCAAUGGCAC
....((((((.((((((.(((.((.....))..))))))))).))))))..(.((((((.(((((....))))).)).)))).)...((((..(((((....))))).......)))).. ( -44.90)
>DroAna_CAF1 1735 120 - 1
ACUGGCCGGCCACAAGGAUCGACAGAAGAUGGCCUGCUUUGUGGCCGGCAUCGAUUCGAAUGGAGUCCUGGCCAGCGUGGACAUCAAGCCAGGCGACGAGAUCGUAGAGGUCAAUGGCAA
....(((((((((((((.....((.....)).....)))))))))))))...(((((.....)))))...((((((.(((........))).)).....((((.....))))..)))).. ( -49.70)
>consensus
UCUGGCCGGCCACAAGGAUCGACAGAAGAUGGCCUGCUUUGUGGCCGGCGUCGAUCCCAAUGGACUGCUGGCCAGCGUGGAUAUGAAGCCGGGCGACGAGAUCGUCGAGGUCAAUGGCAA
....(((((((((((((.....((.....)).....))))))))))))).....................((((((.(((........))).))((((....))))........)))).. (-34.54 = -33.85 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:47 2006