| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,360,578 – 18,360,675 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 18,360,578 – 18,360,675 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.18 |
| Mean single sequence MFE | -35.03 |
| Consensus MFE | -22.06 |
| Energy contribution | -21.87 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18360578 97 - 20766785 AACGCUGGUGUCGCCUUCAGGAGGAGGGCUUUGUGUCCCAGGAAACG--CUUUCUCCCUUGGAACAGAGCUUCACCGCGUGGAAAAUAGAUGCCACCAU ...(.(((((((...((((.(.((.(((((((((.(((.(((.....--.......))).))))))))))))..)).).)))).....))))))).).. ( -32.00) >DroSec_CAF1 6017 97 - 1 AGCGCUGGUGUCGCCUUCAGGAGGAGGGAUUUGAGUCCCAGGAAACG--CUUUCUCCCUUGGAACAGAGCUUCACCGCCUGGAAAAUAGAUGCCACCAU ...(.(((((((...((((((.((.(((((....))))).(....)(--((((.(((...)))..)))))....)).)))))).....))))))).).. ( -33.90) >DroSim_CAF1 10727 97 - 1 AACGCUGGUGUCGCCUUCAGGAGGAGGGCUUUGAGUCCCAGGAAACG--CUUUCUCCCUUGGAACAGAGCUUCACCGCCUGGAAAAUAGAUGCCACCAU ...(.(((((((...((((((.((.((((((((..(((.(((.....--.......))).))).))))))))..)).)))))).....))))))).).. ( -34.70) >DroEre_CAF1 10635 97 - 1 AGCGCUGGUGUCGUCUACAGGAGGAGGACUUCGAGUCCCAGGAAACG--CUCUGUCCCCUGGAGCAGAGCUUUACCGCCUGGAAAAUUGACGUCACCAU .....(((((.((((..((((.((.((((.....))))..(....)(--(((((..(....)..))))))....)).)))).......)))).))))). ( -41.60) >DroYak_CAF1 10768 97 - 1 AGCGUUGGUGUCGCCUCCAGGAGGAGGGCUUCGAGUCCCAGGAAACG--CUUUGUCCCUUGGAACAGAGCUUUACCGCCUGGAAAAUAGAUGUCACCAU .....(((((.((.(((((((.((.((((.....))))..(....)(--((((((((...)).)))))))....)).)))))).....).)).))))). ( -35.20) >DroAna_CAF1 5955 94 - 1 AGCGCUGGUGCCGGUGCCAGGAGG---GACUGGA--UCCAGAAGAGGAACUGUCGGCCUUGGAACAAGGGUUUUCAGCUUGGCAGAUUGACGCUUCCAU ((((((((..(((((.((....))---.))))).--.))))........(((((((.((..((((....))))..)).))))))).....))))..... ( -32.80) >consensus AGCGCUGGUGUCGCCUUCAGGAGGAGGGCUUUGAGUCCCAGGAAACG__CUUUCUCCCUUGGAACAGAGCUUCACCGCCUGGAAAAUAGAUGCCACCAU ...(.(((((((...((((((.((.(((.(((...(((.(((..............))).)))...))).))).)).)))))).....))))))).).. (-22.06 = -21.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:45 2006