Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,312,383 – 1,312,503 |
Length | 120 |
Max. P | 0.917411 |
Location | 1,312,383 – 1,312,503 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -47.66 |
Consensus MFE | -40.02 |
Energy contribution | -40.94 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.18 |
Mean z-score | -1.72 |
Structure conservation index | 0.84 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1312383 120 + 20766785 CUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGUUCCUGCGAACUACUGCGAGUGCGAGGGCACGUUGCAGCCA ((((((...((((((..(((((((..(((...((((((..((((.......)))).......))))))..))).....((((....))))..)))))))..))))))....))))))... ( -50.10) >DroSec_CAF1 30792 120 + 1 UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGCUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA ((((((.((((((((..(((((((....((((.((((((.((((.......))))(((((((........)))).))))))...))).)))))))))))..)))))).)).))))))... ( -50.30) >DroSim_CAF1 9724 120 + 1 UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGCUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA ((((((.((((((((..(((((((....((((.((((((.((((.......))))(((((((........)))).))))))...))).)))))))))))..)))))).)).))))))... ( -50.30) >DroEre_CAF1 13221 120 + 1 UUGCGAACGCCUUGGUGCUCGCGAAAACUGGUGCGUGGCGGGCGUUAAAUUCGCCAGUGACUCCGCGUCAAGUCAACUGUUUCUGAGAACCACUGCGAGUGCGAAGACUGCUUGCAGUCA (((((..(((..((((.((((.(((((((((((..((((....))))....)))))))((((........)))).....)))))))).))))..)))..))))).(((((....))))). ( -44.10) >DroYak_CAF1 320 120 + 1 UUGUGAACGCCUUAAUGCUCGCGAAAACUGGUGCGCGGCGGGCGUAAUAUUCGCCAGUGACUCCGCGUUAAGGCAACUGUUCCUGCAAGCAACUGCGAGUGCGAAGGCAGCUUGCUGUCA ((((((((((((((((((.((((..........))))((.((((.......)))).))......))))))))))....))))..))))...((.((((((((....))).))))).)).. ( -43.50) >consensus UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGUUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA ((((((.(((((((((((((((((..(((...((((((..((((.......)))).......))))))..)))....(((....))).....))))))))))))))).)).))))))... (-40.02 = -40.94 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:04 2006