| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,350,307 – 18,350,423 |
| Length | 116 |
| Max. P | 0.803457 |
| Location | 18,350,307 – 18,350,423 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.95 |
| Mean single sequence MFE | -30.77 |
| Consensus MFE | -24.41 |
| Energy contribution | -24.35 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18350307 116 + 20766785 AUGUAUAUAAGUACCAUAUUUAUAUUGGAUUGCGGCUCAUGCGAUCAAUUGUCAAUGGCUGUAGCUAAUUCUAAGUGCUUUGCACUGCCCCUCUUUCUCGA-GGGGUUCAA---AAACAU .....((((((((...))))))))((((.(((((((.(((..(((.....))).)))))))))))))).....(((((...)))))(((((((......))-)))))....---...... ( -33.00) >DroSim_CAF1 2045 116 + 1 AUGUAUAUAAGUACCAUAUUUAUAUUGGAUUGCGGCUCAUGCGACCAAUUGUCAAUGGCUGUCGCUAAUUCUGAGUGCUUUGCACUGCCCCUCUUUCUCGA-GGGGUUCAA---AAACAU ....(((((((((...))))))))).((((((((((((((..(((.....))).))))..))))).)))))..(((((...)))))(((((((......))-)))))....---...... ( -33.90) >DroEre_CAF1 1854 116 + 1 AUGUAUAUAAGUACCAUAUUUAUAUUGAAUUGCUGCCCAUGCGACCAAUUGUCAAUGGCUCCAGCUAAUUCUGAGUGCUUUGCACUGCCUCUCUUUCUCGA-GGGGUUGAA---AAACAU ....(((((((((...))))))))).(((((((((.((((..(((.....))).))))...)))).)))))..(((((...)))))(((((((......))-)))))....---...... ( -31.60) >DroYak_CAF1 2211 120 + 1 AUGUAUAUAAGUACCUUAUUUAUAUUGAAUUGCUGCCCAUGCGACCAAUUGUCAAUGGCUGAAGCUAAUUCUGAGUACUUUGCACUGCCUCACUUUCUCGACGGGGUUCAAAGAAAACAU (((((((((((((...))))))))).((((((((..((((..(((.....))).))))....))).)))))......(((((.(((.(.((........)).).))).)))))...)))) ( -24.60) >consensus AUGUAUAUAAGUACCAUAUUUAUAUUGAAUUGCGGCCCAUGCGACCAAUUGUCAAUGGCUGUAGCUAAUUCUGAGUGCUUUGCACUGCCCCUCUUUCUCGA_GGGGUUCAA___AAACAU ....(((((((((...))))))))).((((((((((((((..(((.....))).))))..))))).)))))..(((((...)))))(((((((......)).)))))............. (-24.41 = -24.35 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:34 2006