Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,348,951 – 18,349,111 |
Length | 160 |
Max. P | 0.951832 |
Location | 18,348,951 – 18,349,071 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.97 |
Mean single sequence MFE | -50.83 |
Consensus MFE | -48.66 |
Energy contribution | -48.85 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.50 |
Structure conservation index | 0.96 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18348951 120 + 20766785 CCUGGGCGCCUUCAGCUACACAGGCACGGAUUGCGGCACUGUGUUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAUCCCU ...(((.....(((((.((((((((.((.....)))).))))))...((((((((.....(((((....)))))...)))).)))))))))((((((((((...))))))))))..))). ( -48.60) >DroSim_CAF1 708 120 + 1 CCUGGGCGCCUUCAGCUACACGGGCACGGAUUGCGGCACUGUGCUGGCCAUGUUCAUUAGUGGCAUGAUUGCCAAGGGAGCGAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAUCCCU ...(((.((.....))....(((((((((((....((.(((.((..(((.(((((.....(((((....)))))...)))))...)))..)))))))..))))...)))))))...))). ( -48.70) >DroEre_CAF1 534 120 + 1 CCUGGGCGCCUUCAGCUACACGGGCACGGAUUGCGGCACUGUACUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCGCUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAGCCCU ...(((((((..((((......(((.(((..((((....))))))))))..((((.....(((((....)))))...)))))))))))...((((((((((...)))))))))).)))). ( -50.20) >DroYak_CAF1 864 120 + 1 CCUGGGCGCCUUCAGCUACACGGGCACGGAUUGCGGCACUGUGCUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGCGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCCGGAGCCCU .....(((((((..(((((((((((.((.....)))).))))).))))............(((((....))))))))))))...(((((..((((((((((...))))))))))))))). ( -55.80) >consensus CCUGGGCGCCUUCAGCUACACGGGCACGGAUUGCGGCACUGUGCUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAGCCCU ...((((((.....))....(((((((((((....((.(((.((..(((.(((((.....(((((....)))))...)))))...)))..)))))))..))))...)))))))..)))). (-48.66 = -48.85 + 0.19)
Location | 18,348,991 – 18,349,111 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -51.27 |
Consensus MFE | -46.42 |
Energy contribution | -46.05 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -2.29 |
Structure conservation index | 0.91 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.951832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18348991 120 + 20766785 GUGUUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAUCCCUCUGCGCCGCCUGGUGUUUCCUCUGGCUAAUAUUCGCCUCC ((((((((((..........(((((....)))))((((((((..((((.(((((((...((((.........))))...)))).)))))))..)))))))).))))))))))........ ( -47.80) >DroSim_CAF1 748 120 + 1 GUGCUGGCCAUGUUCAUUAGUGGCAUGAUUGCCAAGGGAGCGAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAUCCCUCUGCGCCGCCUGGUGCUUCCUCUGGCUGAUAUUCGCCUCC .....((((((((.((....)))))))...((((((((((((..((((.(((((((...((((.........))))...)))).)))))))..)))))))).))))........)))... ( -46.40) >DroEre_CAF1 574 120 + 1 GUACUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCGCUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAGCCCUCUGCGCCGCCUGGUGCUUCCUCUGGCUGAUAUUCGCCUCC .....((((((((.((....)))))))...(((((((((((((..(((.((((((((((((...)))))))))..((.....))))))))..))))))))).))))........)))... ( -54.80) >DroYak_CAF1 904 120 + 1 GUGCUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGCGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCCGGAGCCCUCUGCGCCGCCUGGUGCUUCCUCUGGCUGAUCUUCGCCUCC (..(((((............(((((....)))))..((((((..(((((..((((((((((...)))))))))))))))..))))))))).))..).......(((........)))... ( -56.10) >consensus GUGCUGGCCAUGUUCAUAAGUGGCAUGAUUGCCAAGGGAGCAAUGGGCUGGCCGGGCAUAUCCUAUGUGUCUGGAGCCCUCUGCGCCGCCUGGUGCUUCCUCUGGCUGAUAUUCGCCUCC .....((((((((.((....)))))))...((((((((((((..((((.((((((((((((...)))))))))((....))...)))))))..)))))))).))))........)))... (-46.42 = -46.05 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:30 2006